The BioBricks Foundation:Standards/Technical/Exchange: Difference between revisions
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SBOL is designed to: | SBOL is designed to: | ||
Allow synthetic biologists and genetic engineers to electronically exchange designs. | *Allow synthetic biologists and genetic engineers to electronically exchange designs. | ||
Send and receive genetic designs to and from biofabrication centers. | *Send and receive genetic designs to and from biofabrication centers. | ||
Facilitate storage of genetic designs in repositories. | *Facilitate storage of genetic designs in repositories. | ||
Embed genetic designs in publications. | *Embed genetic designs in publications. | ||
Read more about SBOL in the [http://www.sbolstandard.org/introduction introduction] | Read more about SBOL in the [http://www.sbolstandard.org/introduction introduction] | ||
Find the technical details on the [http://www.sbolstandard.org/specification specification page] | Find the technical details on the [http://www.sbolstandard.org/specification specification page] | ||
= Development History = | |||
== 2010 May - == | |||
* The SBOL project moved to its own website http://www.sbolstandard.org | |||
== 2009 December - 2010 April == | |||
* Galdzicki, M., Rodriguez, C., Chandran, D., Gennari, J.H., and Sauro, H.M. A Semantic Knowledge Base of Standard Biological Parts. [http://cctbio.ece.umn.edu/wiki/index.php/IWBDA:International_Workshop_on_Bio_Design_Automation International Workshop on Bio-Design and Automation 2010], Anaheim, CA [http://cctbio.ece.umn.edu/wiki/images/3/38/IWBDA_Booklet8.pdf pg 30] | |||
== 2009 August - November == | |||
== 2009 August - | |||
We have divided the working group into sub-topics, each with their own "Nurturer". | We have divided the working group into sub-topics, each with their own "Nurturer". | ||
| Line 42: | Line 49: | ||
* [[Part Sequence Annotation]] -- Tim? | * [[Part Sequence Annotation]] -- Tim? | ||
== 2008 | == 2009 June - July == | ||
[[The_BioBricks_Foundation:Standards/Technical/PoBoL | PoBol: Provisional BioBrick™ Language]] | |||
The document describing the the first round of discussions ( | * July 27, 2009 Galdzicki, M., Chandran, D., Sauro, H.M, Cook, D., and Gennari, J. [http://cctbio.ece.umn.edu/iwbda/slides/Chandran_Galdzicki_Nielsen_Bridging_Synthetic_Biology_Design_and_Experiments_using_PoBoL.pptx Bridging Synthetic Biology Models and Experiments using PoBoL.] [http://cctbio.ece.umn.edu/iwbda-2009/ International Workshop on Bio-Design and Automation 2009], San Francisco, CA | ||
[[The BioBricks Foundation:Standards/Technical/Exchange/Old Discussion|Old Discussion]] | * July 26, 2009 [[The_BioBricks_Foundation:Standards/Technical/2009 biobrick data exchange workshop | Synthetic Biology Data Exchange Working Group Meeting]] Stanford, CA 2009 | ||
== 2008 Feb - 2009 May == | |||
* [[The_BioBricks_Foundation:Standards/Technical/PoBoL | PoBol: Provisional BioBrick™ Language]] | |||
** Final RFC document submited "Provisional BioBrick™ Language (PoBoL)" [http://hdl.handle.net/1721.1/45537 BBF RFC 31] (2009-05-15) | |||
* Draft of an RDF-based framework for the exchange and integration of Synthetic Biology data. [http://hdl.handle.net/1721.1/45143 BBF RFC 30] (2009-04-24) | |||
* April 26, 2008 [http://www.sbolstandard.org/team/meetings/workshop_book_042208.pdf Standards and Specifications in Synthetic Biology Workshop] Seattle, WA 2008 | |||
The document describing the the first round of discussions (February - April) can be found here: | |||
* [[The BioBricks Foundation:Standards/Technical/Exchange/Old Discussion|Old Discussion]] | |||
Latest revision as of 15:56, 19 March 2012
Synthetic Biology Data Exchange
This working group is developing standards and technologies for the description of standard biological parts and the exchange (or networking) of part-related data.
Contact and Participate
Synthetic Biology Data Exchange Group
Meetings
We keep track of our meetings here: http://www.sbolstandard.org/team/meetings
Synthetic Biology Open Language (SBOL)
SBOL Website: http://www.sbolstandard.org/
SBOL is designed to:
- Allow synthetic biologists and genetic engineers to electronically exchange designs.
- Send and receive genetic designs to and from biofabrication centers.
- Facilitate storage of genetic designs in repositories.
- Embed genetic designs in publications.
Read more about SBOL in the introduction
Find the technical details on the specification page
Development History
2010 May -
- The SBOL project moved to its own website http://www.sbolstandard.org
2009 December - 2010 April
- Galdzicki, M., Rodriguez, C., Chandran, D., Gennari, J.H., and Sauro, H.M. A Semantic Knowledge Base of Standard Biological Parts. International Workshop on Bio-Design and Automation 2010, Anaheim, CA pg 30
2009 August - November
We have divided the working group into sub-topics, each with their own "Nurturer".
- Application Scenarios -- Deepak Chandran
- Synthetic Biology Open Language (SBOL)
- Data exchange API (programming interfaces) -- Become a Nurturer!
Further Suggestions:
- Part Sequence Annotation -- Tim?
2009 June - July
- July 27, 2009 Galdzicki, M., Chandran, D., Sauro, H.M, Cook, D., and Gennari, J. Bridging Synthetic Biology Models and Experiments using PoBoL. International Workshop on Bio-Design and Automation 2009, San Francisco, CA
- July 26, 2009 Synthetic Biology Data Exchange Working Group Meeting Stanford, CA 2009
2008 Feb - 2009 May
- PoBol: Provisional BioBrick™ Language
- Final RFC document submited "Provisional BioBrick™ Language (PoBoL)" BBF RFC 31 (2009-05-15)
- Draft of an RDF-based framework for the exchange and integration of Synthetic Biology data. BBF RFC 30 (2009-04-24)
- April 26, 2008 Standards and Specifications in Synthetic Biology Workshop Seattle, WA 2008
The document describing the the first round of discussions (February - April) can be found here:
