http://www.openwetware.org/index.php?title=Tregwiki:Multi-sequence_visualization_of_features&action=history Revision history for this page on the wiki en MediaWiki 1.13.2 Wed, 19 Jun 2013 04:23:19 GMT http://www.openwetware.org/index.php?title=Tregwiki:Multi-sequence_visualization_of_features&diff=173841&oldid=prev <p>1 revision(s)</p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 22:28, 9 December 2007</td> </tr> <!-- diff generator: internal 2013-06-19 02:06:02 --> <!-- diff cache key owwdb:diff:version:1.11a:oldid:173840:newid:173841 --> </table> Sun, 09 Dec 2007 22:28:35 GMT Bill Flanagan http://www.openwetware.org/wiki/Talk:Tregwiki:Multi-sequence_visualization_of_features http://www.openwetware.org/index.php?title=Tregwiki:Multi-sequence_visualization_of_features&diff=173840&oldid=prev <p></p> <p><b>New page</b></p><div>There is really no good tool for this yet that I know of. I've tried some but never really found what I wanted, two or more sequences with features plotted on them or display something like a synteny-plot:<br /> ** [http://www.sanger.ac.uk/Software/Alfresco/ Alfresco]<br /> ** ACT<br /> ** self-written tools that operate in text-mode (ugly, e.g. emboss' prettyseq)<br /> ** Apollo (also in synteny mode)<br /> ** Vector NTI in aligment mode (&quot;Show all features&quot;)<br /> ** My MUMU-tools (export to svg)<br /> ** gff2ps (only one sequence?)<br /> ** Multipipmaker and Vista, when in doubt use multipipmaker, Vista comes almost without any documentation and uses a strange &quot;plotfile&quot; format<br /> ** feature_draw from bioperl (though only for one sequence at a time, very configurable)<br /> ** [http://www.broad.mit.edu/annotation/argo/help/comparative.html Argo] whole genome viewer/editor, with comparative view</div> Thu, 29 Nov 2007 21:56:24 GMT Admin http://www.openwetware.org/wiki/Talk:Tregwiki:Multi-sequence_visualization_of_features