Trizol extraction for RNA and DNA: Difference between revisions
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This is a protocol for harvesting both RNA and DNA from mammalian tissue. It is currently written for tissue preparation but can also be used on cell suspensions and cells grown on a monolayer. | This is a protocol for harvesting both RNA and DNA from mammalian tissue. It is currently written for tissue preparation but can also be used on cell suspensions and cells grown on a monolayer. | ||
==Materials== | |||
*TRIzol or TRIzol LS reagent from [http://invitrogen.com Invitrogen] | |||
*0.1M Sodium Citrate in 10% Ethanol (for 100ml 2.94g of the sodium citrate dihydrate mixed with 10ml EtOH and brought up to 100ml with H<sub>2</sub>O) | |||
*100% Ethanol | |||
*75% Ethanol | |||
*8mM NaOH | |||
==RNA== | ==RNA== |
Revision as of 08:54, 20 August 2007
This is a protocol for harvesting both RNA and DNA from mammalian tissue. It is currently written for tissue preparation but can also be used on cell suspensions and cells grown on a monolayer.
Materials
- TRIzol or TRIzol LS reagent from Invitrogen
- 0.1M Sodium Citrate in 10% Ethanol (for 100ml 2.94g of the sodium citrate dihydrate mixed with 10ml EtOH and brought up to 100ml with H2O)
- 100% Ethanol
- 75% Ethanol
- 8mM NaOH
RNA
Homoginize sample
- Homogonize tissue in 1ml trizol per 50-100 mg of tissue without having more than 10% sample volume compared to trizol
- Incubate sample 5' @ RT
Extract RNA
- Add 0.2ml of chloroform per 1mL of trizol and shake for 15"
- Spin at 12,000xg for 15' @ 4C
- Remove top aqueous phase (SAVE bottom organic phase for DNA)
RNA Precipitation
- Add 0.5ml of isopropanol per 1ml of trizol to the aqueous phase
- Incubate 10' @ RT
- Spin at 12,000xg for 10' @ 4C
- Wash pellet with 1ml 75% EtOH per 1ml trizol then vortex
- Spin at 12,000xg for 5' @ 4C
RNA Resuspension
- Air dry for 5-10' and resuspend in 30-50ul RNAse free H2O
DNA
Percipitation of DNA
- Take organic phase and carefully remove all aqueous phase
- Add 0.4ml 100% EtOH per 1ml of trizol mix by hand
- Incubate 2-3' @ RT
- Spin at 2,000xg for 5' @ 4C
- Remove sup (can be saved for protein purification)
DNA Wash
- Wash pellet 2x with 0.1M Sodium Citrate 10% EtOH 1ml per 1ml of trizol
- At each wash incubate in wash solution for 30' @ RT
- Spin at 2,000xg for 5' @ 4C
- Resuspend in 1.5-2.0ml 75% EtOH and incubate for 10-20' @ RT mix periodically
- Spin at 2,000xg for 5' @ 4C
Redissolve DNA
- Redissolve pellet in 300-600ul of 8mM NaOH per 50-70mg of tissue
- Spin at 12,000xg for 10 minutes to remove cell detritus
- Save supernatant with DNA