Turnbaugh:Publications: Difference between revisions
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#Crohns_perspective pmid=20686177 [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #Crohns_perspective pmid=20686177 [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Illumina_16S pmid=20534432 [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #Illumina_16S pmid=20534432 [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., Fierer, N., Pena, A.G., Goodrich, J.K., Gordon, J.I., Huttley, G.A., Kelley, S.T., Knights, D., Koenig, J.E., Ley, R.E., Lozupone, C.A., McDonald, D., Muegge, B.D., Pirrung, M., Reeder, J., Sevinsky, J.R., Turnbaugh, P.J., Walters, W.A., Widmann, J., Yatsunenko, T., Zanefeld, J., and R. Knight. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods, Epub ahead of print (2010). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., Fierer, N., Pena, A.G., Goodrich, J.K., Gordon, J.I., Huttley, G.A., Kelley, S.T., Knights, D., Koenig, J.E., Ley, R.E., Lozupone, C.A., McDonald, D., Muegge, B.D., Pirrung, M., Reeder, J., Sevinsky, J.R., <b>Turnbaugh, P.J.</b>, Walters, W.A., Widmann, J., Yatsunenko, T., Zanefeld, J., and R. Knight. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods, Epub ahead of print (2010). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Turnbaugh, P.J., Ridaura, V.K., Faith, J.J., Rey, F.E., Knight, R., and J.I. Gordon. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci. Transl. Med. 1, 6ra14 (2009). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #<b>Turnbaugh, P.J.</b>, Ridaura, V.K., Faith, J.J., Rey, F.E., Knight, R., and J.I. Gordon. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci. Transl. Med. 1, 6ra14 (2009). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Turnbaugh, P.J., Quince, C., Faith, J.J., McHardy, A.C., Yatsunenko, T., Niazi, F., Affourtit, J., Egholm, M., Henrissat, B., Knight, R., and J.I. Gordon. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. PNAS, Epub ahead of print (2010). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #<b>Turnbaugh, P.J.</b>, Quince, C., Faith, J.J., McHardy, A.C., Yatsunenko, T., Niazi, F., Affourtit, J., Egholm, M., Henrissat, B., Knight, R., and J.I. Gordon. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. PNAS, Epub ahead of print (2010). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Turnbaugh, P.J. and J.I. Gordon. The core gut microbiome, energy balance, and obesity. J. Phys. 587, 4153-4158 (2009). Epub 2009 June 2. [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #<b>Turnbaugh, P.J.</b> and J.I. Gordon. The core gut microbiome, energy balance, and obesity. J. Phys. 587, 4153-4158 (2009). Epub 2009 June 2. [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Mahowald, M.A., Rey, F.E., Seedorf, H., Turnbaugh, P.J., Fulton, R.S., Wollam, A., Shah, N., Wang, C., Magrini, V., Wilson, R.K., Cantarel, B.L., Coutinho, P.M., Henrissat, B., Crock, L.W., Russell, A., Verberkmoes, N.C., Hettich, R., and J.I. Gordon. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. PNAS 106, 5859-5864 (2009). Epub 2009 Mar 24. [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #Mahowald, M.A., Rey, F.E., Seedorf, H., <b>Turnbaugh, P.J.</b>, Fulton, R.S., Wollam, A., Shah, N., Wang, C., Magrini, V., Wilson, R.K., Cantarel, B.L., Coutinho, P.M., Henrissat, B., Crock, L.W., Russell, A., Verberkmoes, N.C., Hettich, R., and J.I. Gordon. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. PNAS 106, 5859-5864 (2009). Epub 2009 Mar 24. [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Turnbaugh, P.J., Hamady, M., Yatsunenko, T., Cantarel, B.L., Duncan, A., Ley, R.E., Sogin, M.L., Jones, W.J., Roe, B.A., Affourtit, J.P., Egholm, M., Henrissat, B., Heath, A.C., Knight, R., and J.I. Gordon. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2009). Epub 2008 Nov 30. [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #<b>Turnbaugh, P.J.</b>, Hamady, M., Yatsunenko, T., Cantarel, B.L., Duncan, A., Ley, R.E., Sogin, M.L., Jones, W.J., Roe, B.A., Affourtit, J.P., Egholm, M., Henrissat, B., Heath, A.C., Knight, R., and J.I. Gordon. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2009). Epub 2008 Nov 30. [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Turnbaugh, P.J. and J.I. Gordon. An invitation to the marriage of metagenomics and metabolomics. Cell 134, 708-713 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #<b>Turnbaugh, P.J.</b> and J.I. Gordon. An invitation to the marriage of metagenomics and metabolomics. Cell 134, 708-713 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Ley, R.E.,Hamady, M., Lozupone, C., Turnbaugh, P.J., Ramey, R.R., Bircher, J.S., Schlegel, M.L., Tucker, T.A., Schrenzel, M.D., Knight, R., and J.I. Gordon. Evolution of mammals and their gut microbes. Science 320, 1647-1651 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #Ley, R.E.,Hamady, M., Lozupone, C., <b>Turnbaugh, P.J.</b>, Ramey, R.R., Bircher, J.S., Schlegel, M.L., Tucker, T.A., Schrenzel, M.D., Knight, R., and J.I. Gordon. Evolution of mammals and their gut microbes. Science 320, 1647-1651 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Turnbaugh, P.J., Backhed, F., Fulton, L., and J.I. Gordon. Diet-induced obesity in linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3, 213-223 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #<b>Turnbaugh, P.J.</b>, Backhed, F., Fulton, L., and J.I. Gordon. Diet-induced obesity in linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3, 213-223 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Zanefeld, J., Turnbaugh, P.J., Lozupone, C., Ley, R.E., Hamady, M., Gordon, J.I., and R. Knight. Host-bacterial coevolution and the search for new drug targets. Curr. Op. Chem. Bio. 12, 1-6 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #Zanefeld, J., <b>Turnbaugh, P.J.</b>, Lozupone, C., Ley, R.E., Hamady, M., Gordon, J.I., and R. Knight. Host-bacterial coevolution and the search for new drug targets. Curr. Op. Chem. Bio. 12, 1-6 (2008). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
#Turnbaugh, P.J., Ley, R.E., Hamady, M., Fraser-Liggett, C.M., Knight, R. & J.I. Gordon. The human microbiome project. Nature 449, 804-810 (2007). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | #<b>Turnbaugh, P.J.</b>, Ley, R.E., Hamady, M., Fraser-Liggett, C.M., Knight, R. & J.I. Gordon. The human microbiome project. Nature 449, 804-810 (2007). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
# | #<b>Turnbaugh, P.J.</b>, Ley, R.E., Mahowald, M., Magrini, V., Mardis, E.R., and J.I. Gordon. An obesity-associated microbiome with increased capacity for energy harvest. Nature 444, 1027-1031 (2006). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
# | #Ley, R.E., <b>Turnbaugh, P.J.</b>, Klein, S., and J.I. Gordon. Human gut microbes associated with obesity. Nature 444, 1022-1023 (2006). [http://obs.rc.fas.harvard.edu/turnbaugh/ PDF] | ||
# | #Gill, S.R., Pop, M., DeBoy, R.T., Eckburg, P., <b>Turnbaugh, P.J.</b>, Samuel, B., Gordon, J.I., Relman, D., Fraser-Ligett, C.M., and K.E. Nelson. Metagenomic analysis of the human distal gut microbiome. Science 312, 1355-1359 (2006). [http://obs.rc.fas.harvard.edu/turnbaugh/Gill.pdf PDF] | ||
# | #Gertz, J., Riles, L., <b>Turnbaugh, P.</b>, Ho, S., and B.A. Cohen. Discovery, Validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics. Genome Research 15, 1145-1152 (2005). [http://obs.rc.fas.harvard.edu/turnbaugh/Gertz.pdf PDF] | ||
# | #Ley, R. E., Bäckhed, F., <b>Turnbaugh, P.</b>, Lozupone, C., Knight, R. and J. I. Gordon. Obesity alters gut microbial ecology. PNAS 102, 11070-11075 (2005). [http://obs.rc.fas.harvard.edu/turnbaugh/Ley_PNAS.pdf PDF] | ||
</cite> | </cite> | ||
Revision as of 13:47, 27 December 2010
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