Ty Thomson: Difference between revisions

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==Personal==
==Personal==
===Bio===
===Bio===
Born in Toronto in 1979.  Grew up there, and attended the [http://www.utoronto.ca University of Toronto] (UofT, not to be confused with UT, which is some school in texas I hear).  Graduated in 2002 with a BASc (BASc = bachelor of applied science = canadian engineering degree) in Biomedical Engineering from the [http://www.engsci.utoronto.ca/ Engineering Science] program.  For 3 summers in undergrad I worked for MDS Proteomics (which changed names to Protana Inc, and was bought out by [http://www.transitiontherapeutics.com/ Transition Therapeutics]). I started grad school at [http://web.mit.edu/ MIT] in [http://web.mit.edu/be Biological Engineering] (BE) in the fall of 2002.  In January of 2003 I joined [[Drew Endy]]'s lab.  I mainly joined his lab cause he seemed to be the craziest and most outside-of-the-box faculty member in BE.  I have been loosely involved in the synthetic biology community here (although my research is not really synth bio related), including the sythetic biology working group, and I helped organize [http://syntheticbiology.org/Synthetic_Biology_1.0.html Synthetic Biology 1.0].  I am somehow on the OWW steering committee, despite the fact that I rarely use OWW. I seem to be the skeptic/realist in the group, which is needed 'cause I work with a bunch of optimistic hippies.
Born in Toronto in 1979.  Grew up there, and attended the [http://www.utoronto.ca University of Toronto] (UofT, not to be confused with UT, which is some school in texas I hear).  Graduated in 2002 with a BASc (BASc = bachelor of applied science = canadian engineering degree) in Biomedical Engineering from the [http://www.engsci.utoronto.ca/ Engineering Science] program.  For 3 summers in undergrad I worked for MDS Proteomics (which changed names to Protana Inc, and was bought out by [http://www.transitiontherapeutics.com/ Transition Therapeutics]). I started grad school at [http://web.mit.edu/ MIT] in [http://web.mit.edu/be Biological Engineering] (BE) in the fall of 2002.  In January of 2003 I joined [[Drew Endy]]'s lab.  I mainly joined his lab cause he seemed to be the craziest and most outside-of-the-box faculty member in BE.  I was been loosely involved in the synthetic biology community there (although my research was not really synth bio related), including the sythetic biology working group, and I helped organize [http://syntheticbiology.org/Synthetic_Biology_1.0.html Synthetic Biology 1.0].  I'm now working at [http://plectix.com/ Plectix BioSystems] in Somerville MA, helping develop some cool software for biological modeling.
 


[[Image:Ty_and_beer.jpg|thumb|right|Ty on the Sam Adams brewery tour]]
[[Image:Ty_and_beer.jpg|thumb|right|Ty on the Sam Adams brewery tour]]
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===Contact===
===Contact===
'''Address'''<br/>
31 Ames St.<br/>
68-570<br/>
Cambridge, MA 02139<br>
'''Email Address'''<br/>
'''Email Address'''<br/>
tmt -at- mit -dot- edu<br/>
ty -dot- thomson -at- gmail -dot- com<br/>
'''Phone Number'''<br/>
617.258.8684<br/>


==Science==
==Science==
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===Thesis Project===
===Thesis Project===
[[TMT Thesis Project|Characterization of Signaling Pathways Using Time-Varying Stimuli]]
[http://www.yeastpheromonemodel.org/ YeastPheromoneModel.org]
[http://www.yeastpheromonemodel.org/ YeastPheromoneModel.org]


[[TMT Thesis Notes|Near Future Plan and Notes]]
===Blog===
 
[http://blog.plectix.com/ The Plectix Blog]
===Other===
[[TMT To Do List]]


===Publications===
===Publications===
*Stewart, I. I., Thomson, T., Figeys, D., and Duewel, H. S. (2003). "The Use of 18O Labeling as a Tool for Proteomic Applications", [http://doi.contentdirections.com/mr/humana.jsp?doi=10.1226/1588293408 Handbook of Proteomic Methods], Edited by P. Michael Conn. Chapter 11, pages 145-179. (Totowa, New Jersey: Humana Press Inc.)  
*Stewart, I. I., Thomson, T., Figeys, D., and Duewel, H. S. (2003). "The Use of 18O Labeling as a Tool for Proteomic Applications", [http://doi.contentdirections.com/mr/humana.jsp?doi=10.1226/1588293408 Handbook of Proteomic Methods], Edited by P. Michael Conn. Chapter 11, pages 145-179. (Totowa, New Jersey: Humana Press Inc.)  
*Stewart, I. I., Thomson, T., and Figeys, D. (2001). 18O labeling: a tool for proteomics. Rapid Commun. Mass. Spectrom. 15, 2456-2465 [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11746917 link on Pubmed]
*Stewart, I. I., Thomson, T., and Figeys, D. (2001). 18O labeling: a tool for proteomics. Rapid Commun. Mass. Spectrom. 15, 2456-2465 [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11746917 link on Pubmed]

Revision as of 12:36, 21 November 2008

Personal

Bio

Born in Toronto in 1979. Grew up there, and attended the University of Toronto (UofT, not to be confused with UT, which is some school in texas I hear). Graduated in 2002 with a BASc (BASc = bachelor of applied science = canadian engineering degree) in Biomedical Engineering from the Engineering Science program. For 3 summers in undergrad I worked for MDS Proteomics (which changed names to Protana Inc, and was bought out by Transition Therapeutics). I started grad school at MIT in Biological Engineering (BE) in the fall of 2002. In January of 2003 I joined Drew Endy's lab. I mainly joined his lab cause he seemed to be the craziest and most outside-of-the-box faculty member in BE. I was been loosely involved in the synthetic biology community there (although my research was not really synth bio related), including the sythetic biology working group, and I helped organize Synthetic Biology 1.0. I'm now working at Plectix BioSystems in Somerville MA, helping develop some cool software for biological modeling.


Ty on the Sam Adams brewery tour

Hobbies

  • Beer brewing
  • Snowboarding
  • Mountain biking
  • Roller blading
  • Playing various team sports - hockey, football, softball (if that counts as a 'sport')

Things I'm good at that aren't quite hobbies

  • Sleeping
  • Washing dishes

Contact

Email Address
ty -dot- thomson -at- gmail -dot- com

Science

Interests

  • Computational modeling of signalling pathways
  • Parameter sensitivity/identifiability
  • Microfluidics
  • Yeast pheromone response

Thesis Project

YeastPheromoneModel.org

Blog

The Plectix Blog

Publications

  • Stewart, I. I., Thomson, T., Figeys, D., and Duewel, H. S. (2003). "The Use of 18O Labeling as a Tool for Proteomic Applications", Handbook of Proteomic Methods, Edited by P. Michael Conn. Chapter 11, pages 145-179. (Totowa, New Jersey: Humana Press Inc.)
  • Stewart, I. I., Thomson, T., and Figeys, D. (2001). 18O labeling: a tool for proteomics. Rapid Commun. Mass. Spectrom. 15, 2456-2465 link on Pubmed