University of Chicago:NMR Software Guide: Difference between revisions
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Appendix 3: Troubleshooting<br> | Appendix 3: Troubleshooting<br> | ||
==Volume 2: A User’s Guide to NMRView with NvAssign== |
Revision as of 13:41, 19 December 2005
Volume 1: A User’s Guide to NMRPipe
1D Spectrum
- Overview
2D Spectrum
- Overview
- Start the program
- Orient yourself
- Convert Varian’s fid to an NMRPipe fid
- Read in the NMRPipe-format 2D fid.
- Process the first increment
- Edit the script “process2d.com”
- Execute the script “process2d.com”
- Read the spectrum “test.ft” in the NMRPipe GUI
- Phase the F1 dimension
- Edit the script “process2d.com” again
- Re-run the script “process2d.com”
- Convert the NMRPipe file “test.ft” to NMRView format
- You’re done!
Processing 3D Data
- Convert the data
- Process & phase the first plane.
- 3D processing with 2 scripts, LP in 15N only
- Processing 3D data using one script with LP in 13C and 15N
- Examine your 3D spectrum
- Convert the 3D nmrPipe spectrum to nmrView format.
- You are done, done done!
Appendix 1: Phasing
- 1D phasing
- 1D Phasing theory
- Phasing indirectly-detected dimensions
- Relationship between phasing and first point multiplication
- Relationship between linear prediction and phasing
Appendix 2: Installing NMRPipe on a Mac
- Prepare your terminal windows to emulate “t c-shell”
- Edit your “tcshrc” file
Appendix 3: Troubleshooting