User:Abhishek Kumar

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Abhishek Kumar (an artistic interpretation)
  • Dr. Abhishek Kumar
  • Abteilung für Botanische Genetik und Molekularbiologie
  • Botanisches Institut und Botanischer Garten
  • Christian-Albrechts-Universität zu Kiel
  • Kiel, SH, Germany.
  • Email me through OpenWetWare

I work in the AG Kempken at University of Kiel (Christian-Albrechts-Universität zu Kiel) at Kiel, Germany. I learned about OpenWetWare from on web search!!!, and I've joined because Sharing information.

Profile

  • Research Associate in Next generation genome and transcriptome sequencing University of Kiel, Kiel, Germany (webpage: www.uni-kiel.de)
  • Postdoc in insect transcriptome sequencing University of Padova, Padova, Italy (webpage: www.unipd.it)
  • PhD in Bioinformatics University of Bielefeld, Bielefeld, Germany (webpage: www.uni-bielefeld.de)
  • MS, School of Biotechnology, Madurai Kamaraj University, Madurai, India (webpage: www.biotechmku.org)
  • BS, Ewing Christian College, Allahabad University, Allahabad, India (webpage: http://www.ecc.ac.in/)

Research interests

  1. Bioactive compounds from fungi
  2. Next generation sequencing (NGS)
  3. Application of NGS
  4. Molecualr evolution of superfamilies of proteins
  5. Evolution of introns
  6. Gene/Genome Duplications

Publications

  1. 1. Kumar, A*., Sarde, S. J., & Bhandari, A. (2014). Revising angiotensinogen from phylogenetic and genetic variants perspectives. BBRC, 446 (2014) 504–518. doi:10.1016/j.bbrc.2014.02.139.
  1. 2. Kumar, A. …. Grapputo, A. (2014) Sequencing, de novo annotation and transcriptome analysis of the Colorado potato beetle, Leptinotarsa decemlineata. PloS ONE 9(1): e86012.doi:10.1371/journal.pone.0086012.
  1. 3. Kumar, A*., Bhandari, A., Sarde, S. J., & Goswami, C. (2013). Sequence, phylogenetic and variant analyses of antithrombin III. BBRC, 440(4), 714–724. doi:10.1016/j.bbrc.2013.09.134
  1. 4. Kumar, A., Kollath-Leiß, K., & Kempken, F. (2013). Characterization of bud emergence 46 (BEM46) protein: sequence, structural, phylogenetic and subcellular localization analyses. BBRC, 438(3), 526–532. doi:10.1016/j.bbrc.2013.07.103
  1. 5. Traeger, S., Altegoer, F., Freitag, M., Gabaldon, T., Kempken, F., Kumar, A., … Nowrousian, M. (2013). The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution. PLoS Genetics, 9(9), e1003820.
  1. 6. Majhi, R. K., ….Kumar, A., Goswami, C. (2013). Thermosensitive ion channel TRPV1 is endogenously expressed in the sperm of a fresh water teleost fish (Labeo rohita) and regulates sperm motility. Channels (Austin, Tex.), 7(6), 1–10.
  1. 7. Vidotto, M., Grapputo, A., Boscari, E., … Kumar, A., Congiu, L. (2013). Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon. BMC genomics, 14(1), 407. doi:10.1186/1471-2164-14-407 Highly accessed.
  1. 8. Gruettner S., Hopf, C., Kumar, A., & Kempken, F. (2013). Deletions in cox2 mRNA result in loss of splicing and RNA editing and gain of novel RNA editing sites. PLoS ONE, 8(12): e82067. doi:10.1371/journal.pone.0082067.
  1. 9. Kumar A*, Bhandari A, Sinha R, Sardar P, Sushma M, et al. (2012) Molecular Phylogeny of OVOL Genes Illustrates a Conserved C2H2 Zinc Finger Domain Coupled by Hypervariable Unstructured Regions. PLoS ONE 7(6): e39399. doi:10.1371/journal.pone.0039399.
  1. 10. Sardar P, Kumar A, Bhandari A, Goswami C (2012) Conservation of Tubulin-Binding Sequences in TRPV1 throughout Evolution. PLoS ONE 7(4): e31448. doi:10.1371/journal.pone.0031448
  1. 11. Kumar, A.* Bhandari, A. Sinha, R. Goyal, P. Grapputo, A. (2011) Spliceosomal Intron Insertions in Genome Compacted Ray-Finned Fishes as Evident from Phylogeny of MC Receptors, Also Supported by a Few Other GPCRs. PLoS ONE 6(8): e22046.
  1. 12. Goyal, P. Behring, A. Kumar, A. Siess, W. (2011) STK35L1 Associates with Nuclear Actin and Regulates Cell Cycle and Migration of Endothelial Cells. PLoS ONE 6(1): e16249.
  1. 13. Ragg, H. Kumar, A. ………..(2009). Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes. BMC Evolutionary Biology,9:208.
  1. 14. Goyal, P. Behring, A. Kumar, A. Siess, W. (2009). Characterization of a novel protein kinase STK35L1 and deciphering its orthologs and close-homologs in vertebrates. PLoS ONE 4(9): e6981.
  1. 15. Kumar, A. & Ragg, H. (2008). Ancestry and evolution of a secretory pathway serpin. BMC Evolutionary Biology, 8:250. Highly accessed.
  1. 16. Kumar, A. & Krishnaswamy, S (2008). Temperature factor analysis of outer membrane beta-stranded porin crystal structures suggests the pore is not uniformly rigid. Available from Nature Precedings

<http://hdl.handle.net/10101/npre.2008.2495.1>

  1. 17. Kumar, A*. (2005). Delving into vertebrate serpins for understanding their evolution, BREW 2005, Berlin. Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3050.1> (2009).
  1. 18. Tripathi, S. Sonkar, S.K. Kumar, A. Khan, M.Y. & Sarkar, S. (2009). Water soluble carbon nanotubes affect growth of the common gram (Cicer arietinum). Nature Precedings <http://hdl.handle.net/10101/npre.2009.4056.1>.

Useful links

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