User:Alicia Rasines Mazo/Notebook/CHEM-571 Experimental Biological Chemistry/2014/09/30: Difference between revisions

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|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> Project name</span>
|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> Project name</span>
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
|style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}}
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*To prepare calibration curves Ca<sup>2+</sup> and Cl<sup>-</sup>  
*To prepare calibration curves Ca<sup>2+</sup> and Cl<sup>-</sup>  


===Making up calibration curves for Ca<sup>2+</sup> and Cl<sup>-</sup>===
===Determining calibration curves for Ca<sup>2+</sup> and Cl<sup>-</sup>===
Procedure followed as described by [http://openwetware.org/wiki/User:Douglas_M._Fox/Notebook/AU_CHEM-571_F2011_Lab_Support/2014/09/30 Dr. Fox]
Procedure followed as described by [http://openwetware.org/wiki/User:Douglas_M._Fox/Notebook/AU_CHEM-571_F2011_Lab_Support/2014/09/30 Dr. Fox]
*'''Ca<sup>2+</sup> calibration curve'''
*'''Ca<sup>2+</sup> calibration curve'''
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[[Image:CalciumCC.png|337x196px|]]<br.>
**Try measuring 50 μM and 50 mM of other salts to check for interferences (Mg<sup>2+</sup> should, Na<sup>+</sup> should not)
**Try measuring 50 μM and 50 mM of other salts to check for interferences (Mg<sup>2+</sup> should, Na<sup>+</sup> should not)
{| {{table}}
| align="center" style="background:#f0f0f0;"|'''CaCl<sub>2</sub> concentration'''
| align="center" style="background:#f0f0f0;"|'''Cu(II)Cl<sub>2</sub> concentration'''
| align="center" style="background:#f0f0f0;"|'''KCl concentration'''
| align="center" style="background:#f0f0f0;"|'''mV measurement (mV)'''
|-
| 50mM || 0||50mM||86.4
|-
| 50mM || 50mM||0||80.5
|}
'''Note''': There may be minimal interference by Cl<sup>-</sup>
**Be sure to measure HPLC water, DI water, tap water, and your lysozyme stock solution.
**Be sure to measure HPLC water, DI water, tap water, and your lysozyme stock solution.
{| {{table}}
{| {{table}}
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[[Image:ClCC.png]]
**Try measuring 50 μM and 50 mM of other salts to check for interferences & ion-pairing
**Try measuring 50 μM and 50 mM of other salts to check for interferences & ion-pairing
{| {{table}}
{| {{table}}
| align="center" style="background:#f0f0f0;"|'''NaCl concentration'''
| align="center" style="background:#f0f0f0;"|'''NaCl concentration'''
| align="center" style="background:#f0f0f0;"|'''Cu(II)Cl<sub>2</sub> concentration'''
| align="center" style="background:#f0f0f0;"|'''NaSO<sub>4</sub>'''
| align="center" style="background:#f0f0f0;"|'''Na<sub>2</sub>HPO<sub>4</sub><sup>2-</sup>'''
| align="center" style="background:#f0f0f0;"|'''mV measurement (mV)'''
| align="center" style="background:#f0f0f0;"|'''mV measurement (mV)'''
|-
|-
| 50mM || 50 mM||-7.7
| 50mM || 50 mM||0||-27.0
|-
| 50mM || 0||50mM||-30.8
|-
|-
|}
|}
**Be sure to measure HPLC water, DI water, tap water, and your lysozyme stock solution.
**Be sure to measure HPLC water, DI water, tap water, and your lysozyme stock solution.
{| {{table}}
{| {{table}}
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|}
|}
===Dyalisis===
===Dyalisis===
#Dialysis
#Prepare 10 mL 0.5 g/L Lysozyme  
#*Prepare 10 mL 0.5 g/L Lysozyme  
#*Added 0.0050 g to 10mL volumetric flask and made up to mark with HPLC
#**Added 0.0050 g to 10mL volumetric flask and made up to mark with HPLC
#Prepare 2 mL 50 mM CaCl<sub>2</sub> (if you read ahead, you can use your CaCl<sub>2</sub> calibration stock)
#*Prepare 2 mL 50 mM CaCl<sub>2</sub> (if you read ahead, you can use your CaCl<sub>2</sub> calibration stock)
#Prepare 2 mL 500 μM CaCl<sub>2</sub> (if you read ahead, you can use a CaCl<sub>2</sub> calibration dilution)
#*Prepare 2 mL 500 μM CaCl<sub>2</sub> (if you read ahead, you can use a CaCl<sub>2</sub> calibration dilution)
#Prepare 2 mL 50 mM NaCl (if you read ahead, you can use your NaCl calibration stock)
#*Prepare 2 mL 50 mM NaCl (if you read ahead, you can use your NaCl calibration stock)
#Prepare 1 mL 0.25 mM HCl using your 2.5 mM stored stock
#*Prepare 1 mL 0.25 mM HCl using your 2.5 mM stored stock
#Cut a piece of 3500 MWCO flat dialysis tubing, wet it, and insert it in the 5-well dialysis chamber
#*Cut a piece of 3500 MWCO flat dialysis tubing, wet it, and insert it in the 5-well dialysis chamber
#Clamp the dialysis chamber shut
#*Clamp the dialysis chamber shut
#Fill one side of each well with 1 mL of your 0.5 g/L Lysozyme solution
#*Fill one side of each well with 1 mL of your 0.5 g/L Lysozyme solution
#*Transfer 1 mL to a plastic test tube using a pippetter, then
#**Transfer 1 mL to a plastic test tube using a pippetter, then
#*Carefully fill each well with with a glass Pasteur pipette
#**Carefully fill each well with with a glass Pasteur pipette
#*You may need to tip the chamber on an angle to reduce water surface tension
#**You may need to tip the chamber on an angle to reduce water surface tension
#Fill the other side of the well with one of the following solutions
#*Fill the other side of the well with one of the following solutions
#*HPLC water, 0.25 mM HCl, 50 mM CaCl<sub>2</sub>, 500 μM CaCl<sub>2</sub>, or 50 mM NaCl
#**HPLC water, 0.25 mM HCl, 50 mM CaCl<sub>2</sub>, 500 μM CaCl<sub>2</sub>, or 50 mM NaCl
#*Each well has a different solution, which will be tested tomorrow
#**Each well has a different solution, which will be tested tomorrow
#Insert top screws to prevent leaking/evaporation
#*Insert top screws to prevent leaking/evaporation
 
<u>pH measurements</u>
{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Substance'''
| align="center" style="background:#f0f0f0;"|'''pH measurement'''
|-
| 0.25 mM HCl (diluted 10x) (2) || 7.857
|-
| Lysozyme (diluted 10x) (2) || 7.426
|-
|}

Latest revision as of 00:21, 27 September 2017

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Tasks for September 30

  • To run dyalisis
  • To prepare calibration curves Ca2+ and Cl-

Determining calibration curves for Ca2+ and Cl-

Procedure followed as described by Dr. Fox

  • Ca2+ calibration curve
    • Prepare 25 mL 50 mM CaCl2 using HPLC water
      • Added 0.13876g CaCl2 to a 25 mL volumetric flask and made up to the mark with HPLC
    • Using serial dilutions, prepare 25 mL each of 5 mM, 500 μM, 50 μM, & 5 μM CaCl2
    • Measure Ca2+ using ISE
CaCl2 concentration mV measurement (mV)
5μM -44.6
50μM 8.2
500μM 39.5
5mM 63.5
50mM 86.6

<br.>

    • Try measuring 50 μM and 50 mM of other salts to check for interferences (Mg2+ should, Na+ should not)
CaCl2 concentration Cu(II)Cl2 concentration KCl concentration mV measurement (mV)
50mM 0 50mM 86.4
50mM 50mM 0 80.5

Note: There may be minimal interference by Cl-

    • Be sure to measure HPLC water, DI water, tap water, and your lysozyme stock solution.
Substance mV measurement (mV)
Tap water 51.3
HPLC water -23.0
DI water -51.5
Lysozyme 0.5g/L -19.1
  • Cl- calibration curve
    • Prepare 25 mL 50 mM NaCl using HPLC water
      • Added 0.07091 g NaCl to a 25 mL volumetric flask and made up to the mark with HPLC
    • Using serial dilutions, prepare 25 mL each of 5 mM, 500 μM, 50 μM, & 5 μM NaCl
    • Measure Cl- using ISE
NaCl concentration mV measurement (mV)
5μM 146.5
50μM 129.6
500μM 81.3
5mM 27.5
50mM -23.9

    • Try measuring 50 μM and 50 mM of other salts to check for interferences & ion-pairing
NaCl concentration NaSO4 Na2HPO42- mV measurement (mV)
50mM 50 mM 0 -27.0
50mM 0 50mM -30.8
    • Be sure to measure HPLC water, DI water, tap water, and your lysozyme stock solution.
Substance mV measurement (mV)
Tap water 65.5
HPLC water 163.5
DI water 158.8
Lysozyme 0.5g/L 89.4

Dyalisis

  1. Prepare 10 mL 0.5 g/L Lysozyme
    • Added 0.0050 g to 10mL volumetric flask and made up to mark with HPLC
  2. Prepare 2 mL 50 mM CaCl2 (if you read ahead, you can use your CaCl2 calibration stock)
  3. Prepare 2 mL 500 μM CaCl2 (if you read ahead, you can use a CaCl2 calibration dilution)
  4. Prepare 2 mL 50 mM NaCl (if you read ahead, you can use your NaCl calibration stock)
  5. Prepare 1 mL 0.25 mM HCl using your 2.5 mM stored stock
  6. Cut a piece of 3500 MWCO flat dialysis tubing, wet it, and insert it in the 5-well dialysis chamber
  7. Clamp the dialysis chamber shut
  8. Fill one side of each well with 1 mL of your 0.5 g/L Lysozyme solution
    • Transfer 1 mL to a plastic test tube using a pippetter, then
    • Carefully fill each well with with a glass Pasteur pipette
    • You may need to tip the chamber on an angle to reduce water surface tension
  9. Fill the other side of the well with one of the following solutions
    • HPLC water, 0.25 mM HCl, 50 mM CaCl2, 500 μM CaCl2, or 50 mM NaCl
    • Each well has a different solution, which will be tested tomorrow
  10. Insert top screws to prevent leaking/evaporation

pH measurements

Substance pH measurement
0.25 mM HCl (diluted 10x) (2) 7.857
Lysozyme (diluted 10x) (2) 7.426