User:Allison K. Alix/Notebook/Thesis Research/2013/06/05: Difference between revisions
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|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> | |style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> Silica Procedure Prep</span> | ||
|style="background-color: #F2F2F2" align="center"| | |style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]] }}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}} | ||
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NOTE: TES solution will be prepared immediately prior to use to minimize exposure | NOTE: TES solution will be prepared immediately prior to use to minimize exposure | ||
'''Part 2: Preparing ZnPPIX solutions''' | '''Part 2: Preparing ZnPPIX solutions''' | ||
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Zinc protoporphyrin (ZnPPIX) samples will be prepared at the same concentrations, following the same procedure as the ThT samples. | Zinc protoporphyrin (ZnPPIX) samples will be prepared at the same concentrations, following the same procedure as the ThT samples. | ||
2.22μM ZnPPIX and 1.11265μM DNA | |||
''2.22μM ZnPPIX and 1.11265μM DNA'' | |||
(5μM)V=(4.44μM)(300μL) | (5μM)V=(4.44μM)(300μL) | ||
V=266.4μL 5μM ZnPPIX in 33.6μL | V=266.4μL 5μM ZnPPIX in 33.6μL | ||
(53.1μ)V=(2.2253μM)(300μL) | (53.1μ)V=(2.2253μM)(300μL) | ||
V=12.57μL DNA in 287.43μL | V=12.57μL DNA in 287.43μL | ||
ZnPPIX, DNA and AuNP | |||
''ZnPPIX, DNA and AuNP'' | |||
2[ThT]:1[DNA]→ 2.068μM ZnPPIX | 2[ThT]:1[DNA]→ 2.068μM ZnPPIX | ||
10% of 250μL=25μL (within 10% allows for accurate concentration comparison) | 10% of 250μL=25μL (within 10% allows for accurate concentration comparison) | ||
Total solution volume: 275μL | Total solution volume: 275μL | ||
(2.068×10-6M)(275×10-6L)=5.31476×10-10moles ZnPPIX | (2.068×10-6M)(275×10-6L)=5.31476×10-10moles ZnPPIX | ||
(5.31476×10-10moles)/(25×10-6L)=21.3μM ZnPPIX | (5.31476×10-10moles)/(25×10-6L)=21.3μM ZnPPIX | ||
Make 21.3μM ZnPPIX: | * Make 21.3μM ZnPPIX: | ||
(5000μM)V=(21.3μM)(25μL) | (5000μM)V=(21.3μM)(25μL) | ||
V=0.107μL in 24.9μL | V=0.107μL in 24.9μL | ||
Add 25μL of 21.3μM ZnPPIX to 250μL DNA/AuNP solution | |||
* Add 25μL of 21.3μM ZnPPIX to 250μL DNA/AuNP solution | |||
Concentrations: | Concentrations: | ||
DNA- 0.94μM | DNA- 0.94μM | ||
AuNP- 12.55nM | AuNP- 12.55nM | ||
ZnPPIX- 1.9364μM | ZnPPIX- 1.9364μM | ||
2.22μM ZnPPIX | |||
''2.22μM ZnPPIX'' | |||
(5μM)V=(2.22μM)(300μL) | (5μM)V=(2.22μM)(300μL) | ||
V=133.2μL ZnPPIX in 166.8μL | V=133.2μL ZnPPIX in 166.8μL | ||
==Data== | |||
[[Image:Pic_of_ZnPPIX_abs.png]] | |||
[[Image:Pic_of_ZnPPIX_fluor.png]] | |||
==Notes== | |||
To do: | |||
* Prepare new ZnPPIX/DNA sample and take fluorescence (it is curious that there was no fluorescence seen in this sample) | |||
* Prepare AuNP/ZnPPIX sample and take fluorescence (be sure that the fluorescence seen in the AuNP/DNA/ZnPPIX sample is not due to an AuNP/ZnPPIX interaction) | |||
* Dilute beads 10X and 100X more, there was WAY too much signal and no curve seen in FCS measurements | |||
Latest revision as of 22:44, 26 September 2017
Silica Procedure Prep | Main project page Previous entry Next entry |
Objectives
ProceduresPart 1: Preparing solutions for coating AuNP with Silica 1) dissolve 0.716g PVP (10kg/mol) in 10mL water (0.00716M) 2) Dissolve 0.42mL NH4OH (29.3wt% NH3 in H2O) in 9.58mL Ethanol (200 proof) (4.2vol%) NOTE: TES solution will be prepared immediately prior to use to minimize exposure
Zinc protoporphyrin (ZnPPIX) samples will be prepared at the same concentrations, following the same procedure as the ThT samples.
V=266.4μL 5μM ZnPPIX in 33.6μL (53.1μ)V=(2.2253μM)(300μL) V=12.57μL DNA in 287.43μL
10% of 250μL=25μL (within 10% allows for accurate concentration comparison) Total solution volume: 275μL (2.068×10-6M)(275×10-6L)=5.31476×10-10moles ZnPPIX (5.31476×10-10moles)/(25×10-6L)=21.3μM ZnPPIX
(5000μM)V=(21.3μM)(25μL) V=0.107μL in 24.9μL
Concentrations: DNA- 0.94μM AuNP- 12.55nM ZnPPIX- 1.9364μM
V=133.2μL ZnPPIX in 166.8μL DataNotesTo do:
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