User:Andrew W Long/Notebook/Protein Modification/2014/10/17: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
(Autocreate 2014/10/17 Entry for User:Andrew_W_Long/Notebook/Protein_Modification)
 
(fix raw html notebook nav)
 
(One intermediate revision by one other user not shown)
Line 2: Line 2:
|-
|-
|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> Project name</span>
|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> Project name</span>
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
|style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}}
|-
|-
| colspan="2"|
| colspan="2"|
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
==Engineered Metalloproteins==
==Data Analysis and Kinetics Workup==
* Insert content here...
*Import all data from run into Ocean_Optics kinetics template and save.  
 
*Copy data from every 15 minutes into sheet 3. Start time is t=-120s, followed by -60, 0, 60, etc.  
*Perform a "time zero" correction by subtracting the absorbance at each time by the absorbance at t=0 for each corresponding wavelength.  
**For example, this will look like B2-$D2. Drag the crosshatch in the lower left corner of the first cell to perform this correction on all cells.
***The dollar sign makes the value subtracted correspond to the correct wavelength at t=0.
*Now perform a "baseline" correction by clicking on the first empty cell, and typing =(first cell from previous data set)-average(the absorbances at the corresponding wavelengths 800nm and higher). In practice, this will look something like: U2-average(U$1748:U$2049). Drag the crosshatch in the lower left corner of the first cell to perform this correction on all cells.
*Finally, copy the times, then click "paste special," and select "values" under Paste and by ckeck "transpose." This will transpose the times to the y axis. Next copy the absorbances at 420nm from the previous section, and transpose those on the y axis as well. This will show how the concentration of the protein (absorbance peak at 420nm changes over time).


<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->

Latest revision as of 00:26, 27 September 2017

Project name Main project page
Previous entry      Next entry

Data Analysis and Kinetics Workup

  • Import all data from run into Ocean_Optics kinetics template and save.
  • Copy data from every 15 minutes into sheet 3. Start time is t=-120s, followed by -60, 0, 60, etc.
  • Perform a "time zero" correction by subtracting the absorbance at each time by the absorbance at t=0 for each corresponding wavelength.
    • For example, this will look like B2-$D2. Drag the crosshatch in the lower left corner of the first cell to perform this correction on all cells.
      • The dollar sign makes the value subtracted correspond to the correct wavelength at t=0.
  • Now perform a "baseline" correction by clicking on the first empty cell, and typing =(first cell from previous data set)-average(the absorbances at the corresponding wavelengths 800nm and higher). In practice, this will look something like: U2-average(U$1748:U$2049). Drag the crosshatch in the lower left corner of the first cell to perform this correction on all cells.
  • Finally, copy the times, then click "paste special," and select "values" under Paste and by ckeck "transpose." This will transpose the times to the y axis. Next copy the absorbances at 420nm from the previous section, and transpose those on the y axis as well. This will show how the concentration of the protein (absorbance peak at 420nm changes over time).