User:Anugraha Raman/Notebook/iGEM 2010/2010/06/21: Difference between revisions

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* Lab Presentation  
* Lab Presentation  
* Primer Design  
* Primer Design  
**
** (Amplify 300 bp exon following our intron in Fra a 1)
***Took first/last 20 sequences of exon
** (Amplify out intron for use (but this contains biobrick cloning sites so we probably won't do this)
***Took last 5 sequences in exon, first 15 sequences in intron and last 15 sequences in intron and first 5 of following exon)
* GFP Sequence Alignment
* GFP Sequence Alignment
  [[Image:GFPalignment.png|thumb|left|too many mismatches in alignment]]
  [[Image:GFPalignment.png|thumb|left|too many mismatches in alignment]]
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* PCR (Bet v1, Bet v 1.2, Ger 3, LTP 1)
* PCR (Bet v1, Bet v 1.2, Ger 3, LTP 1)
** Set annealing temp for 67.5
** Used ~ 100 ng of genomic aribidopsis DNA/ 50 uL reaction





Revision as of 14:11, 21 June 2010

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Entry title

  • Lab Presentation
  • Primer Design
    • (Amplify 300 bp exon following our intron in Fra a 1)
      • Took first/last 20 sequences of exon
    • (Amplify out intron for use (but this contains biobrick cloning sites so we probably won't do this)
      • Took last 5 sequences in exon, first 15 sequences in intron and last 15 sequences in intron and first 5 of following exon)
  • GFP Sequence Alignment
too many mismatches in alignment









  • PCR (Bet v1, Bet v 1.2, Ger 3, LTP 1)
    • Set annealing temp for 67.5
    • Used ~ 100 ng of genomic aribidopsis DNA/ 50 uL reaction