User:Burak Yilmaz/Notebook/YR10 protein interaction/2009/08/31: Difference between revisions

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==Primer design for arabidopsis GCN2 gene ==
===Primer design for arabidopsis GCN2 gene ===
* forward primer
==forward primer==
5' GGATTAATTAAATGGACTACAAGGACGACGATGACAAAGTCAAGCTTCTCGAGAATTCCGGTCGCAGCAGTTCGAAGAAAAAGAAGAA 3'
* 5' GGATTAATTAAATGGACTACAAGGACGACGATGACAAAGTCAAGCTTCTCGAGAATTCCGGTCGCAGCAGTTCGAAGAAAAAGAAGAA 3'
LENGTH: 77  
* LENGTH: 77  
GC CONTENT: 45.5 %  
* GC CONTENT: 45.5 %  
MELT TEMP: 69.9 ºC   
* MELT TEMP: 69.9 ºC   
MOLECULAR  
* MOLECULAR  
WEIGHT: 23870.5 g/mole  
* WEIGHT: 23870.5 g/mole  


reverse primer
==reverse primer==
5' GGTGCGGCCGCTTAGCTCCAAACAGAGGGGTTTCTAAATTG 3'
*5' GGTGCGGCCGCTTAGCTCCAAACAGAGGGGTTTCTAAATTG 3'
LENGTH: 41  
*LENGTH: 41  
GC CONTENT: 53.7 %  
*GC CONTENT: 53.7 %  
MELT TEMP: 68.8 ºC   
*MELT TEMP: 68.8 ºC   
MOLECULAR  
*MOLECULAR  
WEIGHT: 12681.2 g/mole  
*WEIGHT: 12681.2 g/mole  


TTAATTAA PacI site
*TTAATTAA PacI site
GACTACAAGGACGACGATGACAAA Flag tag
*GACTACAAGGACGACGATGACAAA Flag tag
GCGGCCGC   NotI site
*GCGGCCGC   NotI site





Revision as of 12:31, 3 September 2009

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Primer design for arabidopsis GCN2 gene

forward primer

  • 5' GGATTAATTAAATGGACTACAAGGACGACGATGACAAAGTCAAGCTTCTCGAGAATTCCGGTCGCAGCAGTTCGAAGAAAAAGAAGAA 3'
  • LENGTH: 77
  • GC CONTENT: 45.5 %
  • MELT TEMP: 69.9 ºC
  • MOLECULAR
  • WEIGHT: 23870.5 g/mole

reverse primer

  • 5' GGTGCGGCCGCTTAGCTCCAAACAGAGGGGTTTCTAAATTG 3'
  • LENGTH: 41
  • GC CONTENT: 53.7 %
  • MELT TEMP: 68.8 ºC
  • MOLECULAR
  • WEIGHT: 12681.2 g/mole
  • TTAATTAA PacI site
  • GACTACAAGGACGACGATGACAAA Flag tag
  • GCGGCCGC   NotI site