User:Christopher M Gowen/Sandbox

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This is my sandbox: IT IS FOR EDITING

1. Fong, S.S. "Evolutionary engineering of industrially important microbial phenotypes" in Metabolic Pathway Engineering Handbook. CRC press. In press.

2. Fong, S.S. "Genome-Scale Assessment of Phenotypic Changes during Adaptive Evolution" in Introduction to Systems Biology. Humana Press. In press.

3. Apte AA, Cain JW, Bonchev DG, and Fong SS. Cellular automata simulation of topological effects on the dynamics of feed-forward motifs. J Biol Eng. 2008 Feb 27;2:2. DOI:10.1186/1754-1611-2-2 |
4. Hua Q, Joyce AR, Palsson BØ, and Fong SS. Metabolic characterization of Escherichia coli strains adapted to growth on lactate. Appl Environ Microbiol. 2007 Jul;73(14):4639-47. DOI:10.1128/AEM.00527-07 |
5. Reed JL, Patel TR, Chen KH, Joyce AR, Applebee MK, Herring CD, Bui OT, Knight EM, Fong SS, and Palsson BO. Systems approach to refining genome annotation. Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17480-4. DOI:10.1073/pnas.0603364103 |
6. Herrgård MJ, Fong SS, and Palsson BØ. Identification of genome-scale metabolic network models using experimentally measured flux profiles. PLoS Comput Biol. 2006 Jul 7;2(7):e72. DOI:10.1371/journal.pcbi.0020072 |
7. Hua Q, Joyce AR, Fong SS, and Palsson BØ. Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. Biotechnol Bioeng. 2006 Dec 5;95(5):992-1002. DOI:10.1002/bit.21073 |
8. Fong SS, Joyce AR, and Palsson BØ. The econometrics of evolution. Nat Chem Biol. 2005 Sep;1(4):191-2. DOI:10.1038/nchembio0905-191 |
9. Fong SS, Nanchen A, Palsson BO, and Sauer U. Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes. J Biol Chem. 2006 Mar 24;281(12):8024-33. DOI:10.1074/jbc.M510016200 |
10. Fong SS, Joyce AR, and Palsson BØ. Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Res. 2005 Oct;15(10):1365-72. DOI:10.1101/gr.3832305 |
11. Fong SS, Burgard AP, Herring CD, Knight EM, Blattner FR, Maranas CD, and Palsson BO. In silico design and adaptive evolution of Escherichia coli for production of lactic acid. Biotechnol Bioeng. 2005 Sep 5;91(5):643-8. DOI:10.1002/bit.20542 |
12. Fong SS and Palsson BØ. Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. Nat Genet. 2004 Oct;36(10):1056-8. DOI:10.1038/ng1432 |
13. Fong SS, Marciniak JY, and Palsson BØ. Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model. J Bacteriol. 2003 Nov;185(21):6400-8. DOI:10.1128/JB.185.21.6400-6408.2003 |

14. Reed, J.L., Fong, S.S., Palsson, B.O. "Phenomics" in Microbial Diversity and Bioprospecting ASMPress 2003. (2003)

15. Francis K, Palsson B, Donahue J, Fong S, and Carrier E. Murine Sca-1(+)/Lin(-) cells and human KG1a cells exhibit multiple pseudopod morphologies during migration. Exp Hematol. 2002 May;30(5):460-3. DOI:10.1016/s0301-472x(02)00778-6 |
16. Lee GM, Fong SS, Oh DJ, Francis K, and Palsson BO. Characterization and efficacy of PKH26 as a probe to study the replication history of the human hematopoietic KG1a progenitor cell line. In Vitro Cell Dev Biol Anim. 2002 Feb;38(2):90-6. DOI:10.1290/1071-2690(2002)038<0090:CAEOPA>2.0.CO;2 |

17. Lee, G.M., Fong, S., Francis, K., Oh, D.J., Palsson, B.O. In situ labeling of adherent cells with PKH26. In Vitro Cell. & Developmental Biology Animal. 36(1):4-6. (2000)

18. Pazzano D, Mercier KA, Moran JM, Fong SS, DiBiasio DD, Rulfs JX, Kohles SS, and Bonassar LJ. Comparison of chondrogensis in static and perfused bioreactor culture. Biotechnol Prog. 2000 Sep-Oct;16(5):893-6. DOI:10.1021/bp000082v |