User:David K. Barclay/Notebook/Controlling Pancreas Cell Fate Using Transcription Factors/2014/04/12: Difference between revisions
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## <font color=red>Dr. Haynes: Try Feb. 2009 (hg19)</font> | ## <font color=red>Dr. Haynes: Try Feb. 2009 (hg19)</font> | ||
#Track to UW Histone | #Track to UW Histone | ||
## <font color=red>Dr. Haynes: What did you set '''table''' to?</font> | |||
#Region defined as TSS+250 and TSS-250 above. Format of Defining region as: | #Region defined as TSS+250 and TSS-250 above. Format of Defining region as: | ||
{| class="wikitable" style="width: | {| class="wikitable" style="width: 300px;" | ||
|- valign="top" | |- valign="top" | ||
|chrX || TSS-250 || TSS+250 || gene name | |chrX || TSS-250 || TSS+250 || gene name | ||
|- | |- | ||
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#Output format to "selected fields from primary and related tables." Click get output | #Output format to "selected fields from primary and related tables." Click get output | ||
#Select: chrom, chromStart, chromEnd, name and signalValue | #Select: chrom, chromStart, chromEnd, name and signalValue | ||
Dr. Haynes: When I set "table" to H1-hESC H3K27m3 (wgEncodeBroadHistoneH1hescH3k27me3StdPk), I got the following output for PDX1 | |||
{| class="wikitable" style="width: 800px;" | |||
|- valign="top" | |||
|#chrom || chromStart || chromEnd || name || signalValue | |||
|- | |||
|chr13 || 28468953 || 28571921 || . || 52.9896 | |||
|} | |||
===Results=== | ===Results=== |
Revision as of 14:41, 15 April 2014
Cell Fate Switch by Synthetic Transcription Factors | <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Promoters BioinformaticsH3K27me3 markers TSS sites
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