User:David K. Barclay/Notebook/Controlling Pancreas Cell Fate Using Transcription Factors/2014/04/12: Difference between revisions
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(Autocreate 2014/04/12 Entry for User:David_K._Barclay/Notebook/Controlling_Pancreas_Cell_Fate_Using_Transcription_Factors) |
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== | ==Promoters Bioinformatics== | ||
===H3K27me3 markers TSS sites=== | |||
{| class="wikitable" style="width: 800px;" | |||
|- valign="top" | |||
| '''H3K27me3 Markers TSS sites''' | |||
{| width=300px | |||
|- | |||
| '''Chromosome''' || '''Gene''' || '''TSS+250''' || '''TSS-250''' || '''Signal''' | |||
|- | |||
| 13 || PDX1 || 28493908 || 28494408 || 85.24 | |||
|- | |||
| 6 || GLP1R || 39016307 || 39016807 || 20.72 | |||
|- | |||
| 8 || MAFA || 144509980 || 144510480 || 140.76 | |||
|- | |||
| 5 || PCSK1 || 95725790 || 95726290 || 1 | |||
|- | |||
| 12 || IAPP || 21525552 || 21526052 || 2 | |||
|- | |||
| 20 || KCNQ2 || 62031317 || 62031817 || 4 | |||
|} | |||
===Table Browser Protocl (UCSC)=== | |||
# Go to UCSC Table Browser http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=356574357 | |||
# Clade to Mammal, Genome to Human, Assembly to Mar. 2006 (hg18) | |||
#Track to UW Histone | |||
#Region defined as TSS+250 and TSS-250 above | |||
#Output format to "selected fields from primary and related tables." Click get output | |||
#Select: chrom, chromStart, chromEnd, name and signalValue | |||
===Results=== | |||
No results found, none of genes found with UW histone markers. | |||
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Revision as of 12:20, 14 April 2014
Cell Fate Switch by Synthetic Transcription Factors | <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> | ||||||||||||||||||||||||||||||||||||
Promoters BioinformaticsH3K27me3 markers TSS sites
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