User:David K. Barclay/Notebook/Controlling Pancreas Cell Fate Using Transcription Factors/2014/04/12

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(Autocreate 2014/04/12 Entry for User:David_K._Barclay/Notebook/Controlling_Pancreas_Cell_Fate_Using_Transcription_Factors)
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==Entry title==
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==Promoters Bioinformatics==
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* Insert content here...
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===H3K27me3 markers TSS sites===
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{| class="wikitable" style="width: 800px;"
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|- valign="top"
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| '''H3K27me3 Markers TSS sites'''
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{| width=300px
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|-
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| '''Chromosome''' || '''Gene''' || '''TSS+250''' || '''TSS-250''' || '''Signal'''
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|-
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| 13 || PDX1 || 28493908 || 28494408 || 85.24
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|-
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| 6 || GLP1R || 39016307 || 39016807 || 20.72
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| 8 || MAFA || 144509980 || 144510480 || 140.76
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|-
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| 5 || PCSK1 || 95725790 || 95726290 || 1
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|-
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| 12 || IAPP || 21525552 || 21526052 || 2
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| 20 || KCNQ2 || 62031317 || 62031817 || 4
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|}
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===Table Browser Protocl (UCSC)===
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# Go to UCSC Table Browser http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=356574357
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# Clade to Mammal, Genome to Human, Assembly to Mar. 2006 (hg18)
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#Track to UW Histone
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#Region defined as TSS+250 and TSS-250 above
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#Output format to "selected fields from primary and related tables." Click get output
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#Select: chrom, chromStart, chromEnd, name and signalValue
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===Results===
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No results found, none of genes found with UW histone markers.
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Revision as of 14:20, 14 April 2014

Cell Fate Switch by Synthetic Transcription Factors Main project page
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Promoters Bioinformatics

H3K27me3 markers TSS sites

H3K27me3 Markers TSS sites
Chromosome Gene TSS+250 TSS-250 Signal
13 PDX1 28493908 28494408 85.24
6 GLP1R 39016307 39016807 20.72
8 MAFA 144509980 144510480 140.76
5 PCSK1 95725790 95726290 1
12 IAPP 21525552 21526052 2
20 KCNQ2 62031317 62031817 4

Table Browser Protocl (UCSC)

  1. Go to UCSC Table Browser http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=356574357
  2. Clade to Mammal, Genome to Human, Assembly to Mar. 2006 (hg18)
  3. Track to UW Histone
  4. Region defined as TSS+250 and TSS-250 above
  5. Output format to "selected fields from primary and related tables." Click get output
  6. Select: chrom, chromStart, chromEnd, name and signalValue

Results

No results found, none of genes found with UW histone markers.


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