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| [http://openwetware.org/images/3/38/CV_dbellomo.pdf DOWNLOAD CV] | | [http://openwetware.org/images/3/38/CV_dbellomo.pdf DOWNLOAD CV] |
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| <p><span class="style1">Domenico Bellomo</span><br /><br />
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| <span class="style3">Post-doc</span><br /></p></td>
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| <td align="right"><p class="style2">
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| Mekelweg 4<br />
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| 2628 CD Delft (NL)<br />
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| Cell. +31 (0)64 62 17008<br />
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| Home Tel. +31 (0)15 27 82378<br />
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| Office Tel. +31 (0)15 27 81843<br />
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| E-mail d.bellomo@tudelft.nl<br />
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| </p></td>
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| </tr></table>
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| <table width="100%" cellspacing="10">
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| <td>
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| <span class="style4">Personal Information</span></span>
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| </td></tr>
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| Date of Birth <br />
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| Place of Birth <br />
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| Nationality <br />
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| Marital Status<br />
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| Home address <br />
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| e-mail address <br />
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| May 5th, 1975<br />
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| Bari, Italy<br />
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| Italian<br />
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| Married<br />
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| Javastraat 65, 2585 AG Den Haag (NL)<br />
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| domenico.bellomo@gmail.com<br />
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| </td></tr></table>
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| <table width="100%" cellspacing="10">
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| <td>
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| <span class="style4">Research Interests </span></span>
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| <p align="justify">
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| To gain a better understanding of the dynamics of the biochemical networks within the cell, we need to perturb the individual components of such networks, and to measure in vivo the corresponding response. I see synthetic biology primarily as a tool that can help in this effort to study the cell “from the inside”; and secondarily as a tool to re-engineer cellular functionalities according to some desired specifications. Two crucial steps in this direction are: (i) the design and experimental characterization of libraries of standard building blocks like switches, sensors, logic gates, oscillators, automata; (ii) and the development of methods for the analysis and robust design of such devices.<br />
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| The latter issues are well posed only within an evolutionary perspective.<br /></p>
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| </td></tr></table></p>
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| <table width="100%" cellspacing="10">
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| <tr><td align="right" width="15%"bgcolor="#4080C0" > </td>
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| <td>
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| <span class="style4">Work Experience </span></span>
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| </td></tr>
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| <tr><td align="right" valign="top">
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| Jun 06–Present
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| </td><td align="left">
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| <strong>Post-doc</strong>, <em>Delft Bioinformatics Lab and Bioprocess Technology Group, Delft University<br />
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| of Technology,</em> Delft, The Netherlands.<br />
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| <u>Research</u>: reconstruction of metabolic networks; relation between structure and dynamics in
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| biochemical networks; analysis, design and standardization of synthetic networks.<br />
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| <u>Other activities:</u> <br />
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| <li> Initiator and supervisor of 2008 and 2009 TUDelft iGEM (International Genetically
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| Engineered Machine competition) teams. <br /> iGEM 2008 results: golden medal for quality of work and <strong>"Best Wiki" </strong> prize; <br /> iGEM 2009 results: golden medal for quality and <strong> "Best Information Processing Project" </strong> prize. <br /></li>
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| <li> Initiator and organizer of the biweekly NO-MEC
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| meetings on metabolic networks modeling.</li>
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| </td></tr>
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| <tr><td align="right" valign="top">
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| Apr 05–May 06
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| </td>
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| <td align="left">
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| <strong>R&D engineer</strong><em>, IHC systems B.V.</em> , Sliedrecht, The Netherlands.<br />
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| <u>Tasks</u>: design of stochastic filters for on-line parameter estimation (e.g. Kalman filters, particle
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| filters, etc.).<br />
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| <u>Completed projects:</u> grain-size estimation in water slurry mixture, anchor position estimation,
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| overflow losses estimation, swing speed control.<br />
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| </td></tr>
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| </table>
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|
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| <table width="100%" cellspacing="10">
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| <tr><td align="right" width="15%" bgcolor="#4080C0"></td>
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| <td>
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| <span class="style4">Education </span></span>
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| </td></tr>
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| Jan 01–Mar 05
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| </td><td align="left">
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| <strong>PhD in Electrical Engineering</strong>, <em>, Politecnico di Bari</em>, Bari, Italy.<br />
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| <u>Main topic:</u> Lyapunov based design of adaptive fuzzy controllers for nonlinear servo-drives.<br />
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| <u>Secondary project:</u> design of a decision support system for the optimization of mechanical
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| ventilation settings, in patients affected by acute respiratory syndrome
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| </td></tr>
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| Oct 02–Oct 03
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| </td>
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| <td align="left">
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| <strong>Visiting student</strong><em>,Delft Center for Systems and Control, Delft University of Technology, </em> , Delft, The Netherlands.<br />
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| <u>Research subject:</u>on line identification of fuzzy models.<br />
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| </td></tr>
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| <tr><td align="right" valign="top">
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| Sep 94–Jul 01
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| </td>
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| <strong>Laurea (BA & MSc) in Electrical Engineering</strong><em>, Politecnico di Bari,</em> Bari, Italy.<br />
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| <u>Thesis:</u>Intelligent Control of Nonlinear Systems: a Fuzzy Logic Based Approach<br />
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| Graduation mark: 110/110 cum laude
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| </td></tr>
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| Sep 91–Aug 94
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| </td>
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| <td align="left">
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| <strong>High School,</strong><em>Scientific Lyceum G. Salvemini,</em> Bari, Italy.<br />
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| <u>Thesis:</u>Intelligent Control of Nonlinear Systems: a Fuzzy Logic Based Approach<br />
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| Graduation mark: 60/60
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| </td></tr>
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| </table>
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| <td>
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| <span class="style4">Teaching Assistant Experience </span></span>
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| </td></tr>
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| <tr><td align="right"><br />
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| </td><td align="left">
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| <li>Functional Genomics & Systems Biology (MSc-level), 2009</li>
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| <li>Advanced course in Bioinformatics (postgraduate level), 2008 </li>
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| <li>Computer-Controlled Systems (MSc-level), 2002, 2003</li>
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| </td></tr></table>
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|
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| <table width="100%" cellspacing="10">
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| <td>
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| <span class="style4">Recently supervised MSc projects </span></span>
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| </td></tr>
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| <tr><td align="right"><br />
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| </td><td align="left">
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| <li>B. van den Berg, (supervisors: D. Bellomo, M.J.T. Reinders), “Automated design of synthetic biological systems using standard parts”, Nov 2008- present.</li>
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| <li>P. van Nes (supervisors: D. Bellomo, D. de Ridder and M.J.T. Reinders), “Inferring dynamic properties of metabolic networks from their structural information”, Delft University of Technology, April 4 2008.</li>
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| <li>J. Yong-A-Poi (supervisors: E.P. van Someren, D. Bellomo and M.J.T. Reinders), “Adaptive least absolute regression network analysis improves genetic network reconstruction by employing prior knowledge”, Delft University of Technology, March 28 2008.</li>
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| </td></tr></table>
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|
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| <table width="100%" cellspacing="10">
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| <tr><td align="right" width="15%" bgcolor="#4080C0"></td>
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| <td>
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| <span class="style4">Selected postgraduate courses </span></span>
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| </td></tr>
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| </td><td align="left">
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| <li>² 5th Cytoscape public symposium and developer retreat, Amsterdam, The Netherlands, Nov 2007.</li>
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| <li>Advanced course on applied genomics of industrial fermentation, Wageningen, The Netherlands, Oct 2006</li>
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| <li>Genome access course, Cold Spring Harbor Laboratory, New York, Nov 2005.</li>
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| </td></tr></table>
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|
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| <tr><td align="right" width="15%" bgcolor="#4080C0"></td>
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| <td>
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| <span class="style4">Computer skills </span></span>
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| </td></tr>
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| <tr><td align="right"><br />
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| </td><td align="left">
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| Tools: Latex, Office Packages MATLAB, COPASI, CellNetAnalyzer,<br />
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| Genedata, LabVIEW, dSPACE<br />
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| Languages: C, C++ Platforms Windows, Linux<br />
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| Wet-Lab literacy:<br />
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| Plasmid mini-prep, restriction and ligation (Bio-Brick standards), competent cells transformation,<br />
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| gel electrophoresis, PCR.<br /></td></tr></table>
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|
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| <td>
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| <span class="style4">Languages</span></span>
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| </td></tr>
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| <tr><td align="right">
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| Italian <br />
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| English <br />
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| Dutch <br />
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| German <br />
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| </td><td align="left">
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| Fluent My native language.<br />
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| Fluent Speaking, reading, and writing.<br />
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| Intermediate Delftse methode beginners course: 94/100<br />
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| Basic Reading<br /></td></tr></table>
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|
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| <table width="100%" cellspacing="10">
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| <td>
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| <span class="style4">Hobbies</span></span>
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| </td></tr>
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| <tr><td align="right"><br />
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| </td><td align="left">
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| Reading all kind of popular science books, novels, poetry and techno-thrillers; theater;<br />
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| music; traveling; playing soccer, swimming, table-tennis<br /></td></tr></table>
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|
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| <table width="100%" cellspacing="10">
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| <tr><td align="right" width="15%" bgcolor="#4080C0"></td>
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| <td>
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| <span class="style4">Publications </span></span>
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| </td></tr>
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| <tr><td align="right"><br />
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| </td><td align="left">
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| <p>
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| Systems and Synthetic Biology </p><br />
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| <p>
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| [1b] O. M. J. A Stassen, R. J. J. Jorna, B. A. van den Berg, R. Haghi, F. Ehtemam, S. M.<br />
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| Flipse, J. A Kiers, M. J. L de Groot, I. E. Nikerel, D. Bellomo,“Toward tunable RNA<br />
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| thermo-switches for temperature dependent gene expression”, to be submitted.<br />
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| [2b] F. Menolascina, D. Bellomo, T. Maiwald, V. Bevilacqua, C. Ciminelli, A. Paradiso, and<br />
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| S. Tommasi, “Developing optimal input design strategies in cancer systems biology with<br />
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| applications to micro-fluidic device engineering”, BMC Bioinformatics 2009, in press<br />
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| [3b] P. van Nes, D. Bellomo, M.J.T. Reinders and D. de Ridder, “Stability from structure:<br />
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| metabolic networks are unlike other biological networks”, EURASIP Journal on<br />
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| Bioinformatics and Systems Biology, vol. 2009, pp. Article ID 630695, 2009.<br />
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| [4b] D. Bellomo, D. de Ridder, S. Rossell, P.J.T. Verheijen, M.J.T. Reinders and J.J.<br />
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| Heijnen, “Identifying the regulatory structure of metabolic networks: a constrained<br />
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| optimization approach”, Proceedings of the 14th annual conference of the Advanced<br />
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| School for Computing and Imaging, pp. 250-257, 2008.<br />
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| [5b] D. Bellomo, P. van Nes, M.J.T. Reinders and D. de Ridder, “Stability cannot be derived<br />
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| from local structure in biochemical network”, Proceedings of the 3rd international<br />
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| conference on bio-inspired models of network, information, and computing systems,<br />
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| ICST, Gent, Belgium, 2008.<br />
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| [6b] D. Bellomo, D. de Ridder, J.J. Heijnen, M. J.T. Reinders, W. A. van Winden, P.J.T.<br />
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| Verheijen, “Identifiability of metabolic networks in pulse experiments”, Proceedings of<br />
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| the 13th annual conference of the Advanced School for Computing and Imaging, 2007.<br />
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| </p><br />
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| <p>
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| Systems and Control Theory</p><br />
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| <p>
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| [1c] D. Bellomo, D. Naso, R. Babuška, “Adaptive fuzzy control of a non-linear servo-drive:<br />
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| theory and experimental results”, Engineering Applications of Artificial Intelligence, vol.<br />
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| 21, no. 6, September 2008.<br />
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| [2c] D. Bellomo, Babuška R., Naso, D., “Adaptive fuzzy control for speed-reference tracking<br />
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| in nonlinear servo drives”, Proceeding of 14th IFAC Symposium on System Identification,<br />
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| March 29-31, 2006, Newcastle, Australia.<br />
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| [3c] D. Bellomo, Naso, D., Babuška R., “Experimental comparison of adaptive fuzzy controllers”,<br />
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| Proceeding of FuzzIEEE 2005, Conference on Fuzzy systems , May 22-25,<br />
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| Reno, Nevada, USA.<br />
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| [4c] D. Bellomo, D. Naso, B. Turchiano, R. Babuška, “Composite adaptation in adaptive<br />
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| fuzzy control”, Proceedings of 16th IFAC World Congress, Prague, Czech Republic, July<br />
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| 4 to July 8, 2005<br />
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| [5c] D. Bellomo, D. Naso, R. Babuška, “Parameter convergence in adaptive fuzzy control”,<br />
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| Proceedings of the 1st International Conference on Informatics in Control, Automation<br />
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| and Robotics, vol.2, 25-28 August 2004, Setubal, Portugal.<br />
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| [6c] D. Bellomo, D. Naso, B. Turchiano, “Improving genetic algorithms: an approach based<br />
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| on multi-elitism and Lamarckian mutation”, Proceedings of 2002 IEEE International<br />
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| Conference on Systems, Man and Cybernetics, Vol. 4 , 6-9 Oct. 2002.<br />
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| </p></td></tr></table>
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|
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| <p>
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| Updated<br />
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| November 6th, 2009<br />
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| </p>
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| </body>
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