User:Dstoebel

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==About me==
==About me==
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I am interested in the evolution of regulatory networks in bacteria, and how horizontally acquired genes are integrated into those networks.  I am currently a post-doctoral fellow with [http://web.mac.com/tim_f_cooper/Cooper_lab/Cooper_lab.html Tim Cooper] at the University of Houston. From 2007 to 2009, I was a post-doc with [http://www.tcd.ie/Microbiology/research/cj_dorman.php Charles Dorman] in the department of Microbiology at Trinity College, Dublin.  I did my Ph.D. with [http://life.bio.sunysb.edu/ee/people.htm Dan Dykhuizen] in the Department of Ecology and Evolution at Stony Brook University, graduating in December, 2006.  My undergraduate degree is from Pomona College.
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I am interested in the evolution of regulatory networks in bacteria, and how horizontally acquired genes are integrated into those networks. In July 2010, I will be moving to the [http://www.hmc.edu/academicsclinicresearch/academicdepartments/biology1.html Biology Department] of Harvey Mudd College as an Assistant Professor.  I am currently a post-doctoral fellow with [http://web.mac.com/tim_f_cooper/Cooper_lab/Cooper_lab.html Tim Cooper] at the University of Houston. From 2007 to 2009, I was a post-doc with [http://www.tcd.ie/Microbiology/research/cj_dorman.php Charles Dorman] in the department of Microbiology at Trinity College, Dublin.  I did my Ph.D. with [http://life.bio.sunysb.edu/ee/people.htm Dan Dykhuizen] in the Department of Ecology and Evolution at Stony Brook University, graduating in December, 2006.  My undergraduate degree is from Pomona College.
==Publications==
==Publications==
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'''D. M. Stoebel.''' 2005. Lack of evidence for horizontal transfer of the ''lac'' operon into ''Escherichia coli''. ''Molecular Biology and Evolution''. '''22''':683-690.  [http://mbe.oxfordjournals.org/cgi/content/full/22/3/683 Full Text]
'''D. M. Stoebel.''' 2005. Lack of evidence for horizontal transfer of the ''lac'' operon into ''Escherichia coli''. ''Molecular Biology and Evolution''. '''22''':683-690.  [http://mbe.oxfordjournals.org/cgi/content/full/22/3/683 Full Text]
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M. Feldgarden, '''D. M. Stoebel''', D. Brisson, and D.E. Dykhuizen. 2003. Size doesn't matter: microbial selection experiments address ecological questions. ''Ecology'' '''84''':1679-1687.
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M. Feldgarden, '''D. M. Stoebel''', D. Brisson, and D.E. Dykhuizen. 2003. Size doesn't matter: microbial selection experiments address ecological questions. ''Ecology'' '''84''':1679-1687. [http://micropopbio.org/cooper/files/2008/03/feldgarden-selection-experiments.pdf Full Text]
==Protocols that I use==
==Protocols that I use==

Revision as of 20:06, 10 April 2010

Contents

Contact Information

Dan Stoebel

Department of Biology and Biochemistry
University of Houston
Houston TX 77204

About me

I am interested in the evolution of regulatory networks in bacteria, and how horizontally acquired genes are integrated into those networks. In July 2010, I will be moving to the Biology Department of Harvey Mudd College as an Assistant Professor. I am currently a post-doctoral fellow with Tim Cooper at the University of Houston. From 2007 to 2009, I was a post-doc with Charles Dorman in the department of Microbiology at Trinity College, Dublin. I did my Ph.D. with Dan Dykhuizen in the Department of Ecology and Evolution at Stony Brook University, graduating in December, 2006. My undergraduate degree is from Pomona College.

Publications

D. M. Stoebel, K. Hokamp, M. S. Last and C. J. Dorman. 2009. Compensatory evolution of gene regulation in response to stress by E. coli lacking RpoS. PLoS Genetics 5: e1000671 Full Text

D. M. Stoebel, A. Free, and C. J. Dorman. 2008. Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria. Microbiology, 154: 2533-2545. Full Text

D. M. Stoebel, A. M. Dean, and D. E. Dykhuizen. 2008. The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics, 178:1653-1660. Full Text

D. M. Stoebel. 2005. Lack of evidence for horizontal transfer of the lac operon into Escherichia coli. Molecular Biology and Evolution. 22:683-690. Full Text

M. Feldgarden, D. M. Stoebel, D. Brisson, and D.E. Dykhuizen. 2003. Size doesn't matter: microbial selection experiments address ecological questions. Ecology 84:1679-1687. Full Text

Protocols that I use

λ-red mediated recombination

Chloroquine gels

P1 transduction

P22 transduction

Quick and dirty electrocompotent cells

Making Intracellular Salts Medium

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