User:Eamon B. O'Dea: Difference between revisions
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==Contact Info== | ==Contact Info== | ||
[[Image: | [[Image:EamonBODea_mug.jpg|thumb|right|alt=mugshot|Eamon B. O'Dea ]] | ||
*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]] | *[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]] | ||
*[http://www.georgetown.edu Georgetown University] | |||
*[http://biology.georgetown.edu/ Department of Biology] | |||
*Washington, DC 20057 | |||
==Postdoc Lab== | |||
*[http://bansallab.com/ Bansal] | |||
==PhD Labs== | |||
*[http://www.bio.utexas.edu/research/meyers/ Meyers] | |||
*[[Wilke:Lab-Home|Wilke]] | |||
==Education== | ==Education== | ||
<!--Include info about your educational background--> | <!--Include info about your educational background--> | ||
* | * 2013, PhD, [http://www.biosci.utexas.edu/graduate/eeb UT Austin, EEB] | ||
* | * 2008, BS, [http://www.geneseo.edu/CMS/display.php?dpt=biology SUNY Geneseo, Biology] | ||
* | |||
==Research== | |||
===Models and methods=== | |||
* Parameter estimation for stochastic epidemic models | |||
* Parameter estimation for dynamic contact networks | |||
* Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics | |||
* Degree correlations in complex networks | |||
* Mutational robustness | |||
===Areas of application=== | |||
* Infectious diseases of livestock | |||
* Norovirus epidemiology | |||
* HIV epidemiology | |||
* Lethal mutagenesis | |||
=== Papers === | |||
* E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. [http://dx.doi.org/10.1016/j.epidem.2013.12.002 doi:10.1016/j.epidem.2013.12.002] | |||
* E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. [http://dx.doi.org/10.1155/2011/238743 doi:10.1155/2011/238743] | |||
* E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol. | |||
6:e1000811. [http://dx.doi.org/10.1371/journal.pcbi.1000811 doi:10.1371/journal.pcbi.1000811] | |||
=== Presentations === | |||
* E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY. | |||
== | === Posters === | ||
* E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam. | |||
* E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego. | |||
== | === Code === | ||
* [[Media:Ebodea-multi-outbreaks-code-2013-10-01T18-04-11-0400.zip| Code used in my manuscript on fitting outbreak models to data from multiple outbreaks]] | |||
*[[ | |||
Revision as of 12:54, 10 January 2014
Contact Info
- Georgetown University
- Department of Biology
- Washington, DC 20057
Postdoc Lab
PhD Labs
Education
- 2013, PhD, UT Austin, EEB
- 2008, BS, SUNY Geneseo, Biology
Research
Models and methods
- Parameter estimation for stochastic epidemic models
- Parameter estimation for dynamic contact networks
- Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
- Degree correlations in complex networks
- Mutational robustness
Areas of application
- Infectious diseases of livestock
- Norovirus epidemiology
- HIV epidemiology
- Lethal mutagenesis
Papers
- E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. doi:10.1016/j.epidem.2013.12.002
- E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. doi:10.1155/2011/238743
- E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.
6:e1000811. doi:10.1371/journal.pcbi.1000811
Presentations
- E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY.
Posters
- E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam.
- E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.