User:Eamon B. O'Dea

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Current revision (19:31, 30 June 2014) (view source)
(Contact Info: Add key fingerprint)
 
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*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]]
*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]]
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*[http://www.utexas.edu University of Texas at Austin]
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*[http://www.georgetown.edu Georgetown University]
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*[http://www.biosci.utexas.edu/ib Section of Integrative Biology]
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*[http://biology.georgetown.edu/ Department of Biology]
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*Austin, TX 78712
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*Washington, DC 20057
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* OpenPGP key fingerprint:  93B8 FBFA 3C2C 9038 B6E9  24D7 D4C6 B841 F4AE EAD5
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==Labs==
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==Postdoc Lab==
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*[http://bansallab.com/ Bansal]
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==PhD Labs==
*[http://www.bio.utexas.edu/research/meyers/ Meyers]
*[http://www.bio.utexas.edu/research/meyers/ Meyers]
*[[Wilke:Lab-Home|Wilke]]
*[[Wilke:Lab-Home|Wilke]]
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==Education==
==Education==
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==Research==
==Research==
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===Interests===
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<!-- Feel free to add brief descriptions to your research interests as well -->
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* Infectious disease
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===Models and methods===
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* Virus evolution
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* Parameter estimation for stochastic epidemic models
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* Parameter estimation for dynamic contact networks
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* Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
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* Degree correlations in complex networks
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* Mutational robustness
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===Areas of application===
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* Infectious diseases of livestock
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* Norovirus epidemiology
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* HIV epidemiology
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* Lethal mutagenesis
=== Papers ===
=== Papers ===
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* E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. [http://dx.doi.org/10.1016/j.epidem.2013.12.002 doi:10.1016/j.epidem.2013.12.002]
* E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. [http://dx.doi.org/10.1155/2011/238743 doi:10.1155/2011/238743]
* E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. [http://dx.doi.org/10.1155/2011/238743 doi:10.1155/2011/238743]
* E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.  
* E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.  
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=== Posters ===
=== Posters ===
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* E. B. O'Dea. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.
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* E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam. 
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* E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.
=== Code ===
=== Code ===
* [[Media:Ebodea-multi-outbreaks-code-2013-10-01T18-04-11-0400.zip| Code used in my manuscript on fitting outbreak models to data from multiple outbreaks]]
* [[Media:Ebodea-multi-outbreaks-code-2013-10-01T18-04-11-0400.zip| Code used in my manuscript on fitting outbreak models to data from multiple outbreaks]]

Current revision

Contact Info

Eamon B. O'Dea
Eamon B. O'Dea

Postdoc Lab

PhD Labs

Education

Research

Models and methods

  • Parameter estimation for stochastic epidemic models
  • Parameter estimation for dynamic contact networks
  • Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
  • Degree correlations in complex networks
  • Mutational robustness

Areas of application

  • Infectious diseases of livestock
  • Norovirus epidemiology
  • HIV epidemiology
  • Lethal mutagenesis

Papers

  • E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. doi:10.1016/j.epidem.2013.12.002
  • E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. doi:10.1155/2011/238743
  • E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.

6:e1000811. doi:10.1371/journal.pcbi.1000811

Presentations

  • E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY.

Posters

  • E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam.
  • E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.

Code

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