User:Fermenter User/Notebook/DOE Workshop 20110405: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
Line 284: Line 284:
{| {{table}}
{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Runs'''
| align="center" style="background:#f0f0f0;"|'''Runs'''
| align="center" style="background:#f0f0f0;"|'''4, 5, 6'''
| align="center" style="background:#f0f0f0;"|'''7, 8, 9'''
| align="center" style="background:#f0f0f0;"|'''7, 8, 9'''
| align="center" style="background:#f0f0f0;"|'''10, 11, 12'''
| align="center" style="background:#f0f0f0;"|'''10, 11, 12'''
| align="center" style="background:#f0f0f0;"|''''''
|-
|-
| 07:30||||<font color=gray> SH: Prepare hight density K19 cells </font>||
| pictures||[[Image:colonys_456.jpg|400px|thumb|center|run 4,5,6 (left to right) ]] || [[Image:fermentation_789.jpg|400px|thumb|center|run 7,8,9 (left to right) ]] ||
|-
|-
| 08:00||||<font color=gray> SH: Prepare dilution tubes </font>||
| 08:00||<font color=#734A12> Ann: Colony counting </font>|| <font color=gray> SH: Sampling </font>||
|-
|-
| 09:00||<font color=blue> Group B: Colony check </font>|| <font color=gray> SH: Sampling </font>||
| 09:00||||<font color=#734A12> Ann: Prepare high density K91 cells <br> <font style:background-color="yellow"><--didn't grow very well due to power outage </font></font>||<font color=red> Group A: Assemble bioreactors </font>
|-
|-
| 09:30||||<font color=#734A12> Ann: Phage dilution </font>||
| 09:50||||||<font color=red> Group A: Autoclave </font>
|-
|-
| 09:50||||<font color=#734A12> Ann: OD of HD cells </font>||
| 10:00||Presentation||Presentation|| Presentation
|-
|-
| 10:00||||<font color=#734A12> Ann: Dry plates </font>||
| 11:00||||<font color=#734A12> </font>||<font color=red> Group A: Install bioreactors</font>
|-
|-
| 10:30||||<font color=#734A12> Ann: Infect K19 cells </font>||
| 12:00||||<font color=#734A12> </font>||  
|-
|-
| 11:10||||<font color=#734A12> Ann: Spot titer </font>||
| 15:30||||||<font color=gray> SH: Thaw stock
|-
|-
| 15:30||||||
| 16:50||||||<font color=gray> SH: Pre-culture for HD K91 cells
|-
|-
| 16:50||||||
| 17:00||||||<font color=gray> SH: Inoculation
|-
|-
| 17:00||||||
|-
|
|}
|}


  NO PRESENTATION
  NO PRESENTATION

Revision as of 10:49, 8 April 2011

WORK B1


1st LSI-CBR Design of Experiment (DOE) process Optimization Workshop

Teaching:


When: April 5th - April 14th 2011

Where: LSI 4th floor CBR Fermentation Suite (Rm 4332) and Rm 4332

Attending:

  • Ann Y.K. Wong: Assistant Instructor, Ph.D. previously MacGillivray lab
  • Louise Creagh: Senior Instructor, Manager at Centre for BioThermodynamics, Laboratory of Molecular Biophysics
  • Raymond Pan: PhD Student, Department of Biochemistry and Molecular Biology(Bromme lab)
  • Swati N. Yewalkar: Postdoctoral Fellow, Department of Chemical and Biological Engineering
  • Yuen Yi Chris Tam: Yuen Yi Chris Tam, PhD, Research Associate, Department of Biochemistry and Moledular Biology (Pieter Cullis Lab)
  • Shiau-Yun (Mary) Tang (UBC Alumni)


Group A:

(After you log in with your personal password, click the "EDIT" button on the right side of GROUP A and list your name below)

Chris Tam
Louise Creagh

Group B:

(After you log in with your personal password, click the "EDIT" button on the right side of GROUP B and list your name below)

MARY TANG
Swati Yewalkar





Off-line Measurement

NOTE: This is a Sortable table. Click triangle symbol next to some headings to sort.
Run Std Group Day Temp DO pH Day OD Media (ml) Day Response 1 Response 2 Response 3
1 15 I -1 NA NA NA 0 3.500 1080 1 (R1) 6.20E+11 (R2)
2 14 I -1 NA NA NA 0 0.032 840 1 (R2) 3.56E+08 (R2)
3 4 I -1 NA NA NA 0 0.263 650 1 (R3) 2.60E+09 (R3)
4 9 A 1 NA NA NA 2 (OD=) ( ml) 3 (R4) (R4) (R4)
5 17 A 1 NA NA NA 2 (OD=) ( ml) 3 (R5) (R5) (R5)
6 3 A 1 NA NA NA 2 (0.055) (670) 3 (R6) (R6) (R6)
7 12 B 2 NA NA NA 3 (OD= ) ( ml) 4 (R7) (R7) (R7)
8 7 B 2 NA NA NA 3 (0.146) (660) 4 (R8) (R8) (R8)
9 1 B 2 NA NA NA 3 (0.058) (690) 4 (R9) (R9) (R9)
10 19 A 3 NA NA NA 4 (OD= ) ( ml) 5 (R10) (R10) (R10)
11 10 A 3 NA NA NA 4 (OD= ) ( ml) 5 (R11) (R11) (R11)
12 8 A 3 NA NA NA 4 (OD= ) ( ml) 5 (R12) (R12) (R12)
11 10 A 4 NA NA NA 5 (OD= ) ( ml) 6 (R11) (R11) (R11)
13 16 B 4 NA NA NA 5 (OD= ) ( ml) 6 (R13) (R13) (R13)
14 11 B 4 NA NA NA 5 (OD= ) ( ml) 6 (R14) (R14) (R14)
15 5 B 6 NA NA NA 7 (OD= ) ( ml) 8 (R15) (R15) (R15)
16 13 A 6 NA NA NA 7 (OD= ) ( ml) 8 (R16) (R16) (R16)
17 6 A 6 NA NA NA 7 (OD= ) ( ml) 8 (R17) (R17) (R17)
18 18 A 7 NA NA NA 8 (OD= ) ( ml) 9 (R18) (R18) (R18)
19 2 B 7 NA NA NA 8 (OD= ) ( ml) 9 (R19) (R19) (R19)
20 20 B 7 NA NA NA 8 (OD= ) ( ml) 9 (R20) (R20) (R20)
4 9 A 8 NA NA NA 9 (OD= ) ( ml) 10 (R4) (R4) (R4)
5 17 A 8 NA NA NA 9 (OD=) ( ml) 10 (R5) (R5) (R5)
7 12 B 8 NA NA NA 9 (OD= ) ( ml) 10 (R7) (R7) (R7)



Day -1 (April 4th, Mon)

Runs ' ' 1, 2, 3
07:30
08:00
09:00
09:30 SH: Assemble bioreactors
09:50 SH: Autoclve
10:00
10:30
11:10 SH: Install bioreactors
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K19 cells
17:00 SH: Inoculation

Day 1 (April 5th, Tue) <-- WORKSHOP STARTS

Runs ' 1, 2, 3 4, 5, 6
pictures
run 1, 2, 3 (left to right)
08:30 SH: Sampling
09:30 Ann: Prepare high density K91 cells Group A: Assemble bioreactors
09:50 Group A: Autoclave
10:40 Presentation Presentation
12:00 Ann: Phage infection Group A: Install bioreactors
13:00 Ann: Spot titer
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K19 cells
17:00 SH: Inoculation
10:00 - 11:00 Presentation (Rm 4.303)
 # Introduction about our Facility and Services
 # Introduction about bioreactors
 # How to assemble bioreactors


Power Outage started around 8pm and lasted approximately 2.5 hrs.
Bio-controllers and computer were connected to UPS (undisrupted power suppliers).
Unfortunately, data has been lost due to power outage.
Run #4 losted power during fermentation. End point looked ok. 
Run #5 was not affected by power. However, pH control was not done properly. 
Run #6 was not affected by power. End point looked ok.
=> Run #5 will be repeated at last as additional runs.

Day 2 (April 6th, Wed)

Runs 1, 2, 3 4, 5, 6 7, 8, 9
pictures
run 1,2,3 (left to right)
run 4,5,6 (left to right)
08:00 Ann: Colony counting SH: Sampling
09:00 Ann: Prepare high density K91 cells Group B: Assemble bioreactors
09:50 Group B: Autoclave
10:00 Presentation Presentation Presentation
11:00 Ann: Phage infection Group B: Install bioreactors
12:00 Ann: Spot titer
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K91 cells
17:00 SH: Inoculation
10:00 - 11:00 Presentation (Rm 4.303)
 # Fermentation Database and Websites
 # How to Install Bioreactors
 # How to Setup Bio-controllers

Another Power Outage started around 6:45pm and lasted approximately 1.5 hrs.
Bio-controllers and computer were connected to UPS (undisrupted power suppliers).
Unfortunately, data has been lost due to power outage.
Run #7 losted power during fermentation. End point looked ok. 
Run #8 was not affected by power. End point looked ok. 
Run #9 was not affected by power. End point looked ok.
=> Run #7 will be repeated at last as additional runs.

Day 3 (April 7th, Thu)

Runs 4, 5, 6 7, 8, 9 10, 11, 12
pictures
run 4,5,6 (left to right)
run 7,8,9 (left to right)
08:00 Ann: Colony counting SH: Sampling
09:00 Ann: Prepare high density K91 cells
<--didn't grow very well due to power outage
Group A: Assemble bioreactors
09:50 Group A: Autoclave
10:00 Presentation Presentation Presentation
11:00 Group A: Install bioreactors
12:00
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K91 cells
17:00 SH: Inoculation


10:00 - 11:00 Presentation (Rm 4.303)
 # DOE Step 1. Design Experiments

Due to unnotified power outage, two of emergency power lines were introduced into fermentation suite.
One was connected to a computer and one was connected to incubator.
Also, each fermenter is now connected to batteries to provide over 500 min capacity.

Day 4 (April 8th, Fri)

Runs 4, 5, 6 7, 8, 9 10, 11, 12
pictures
run 4,5,6 (left to right)
run 7,8,9 (left to right)
08:00 Ann: Colony counting SH: Sampling
09:00 Ann: Prepare high density K91 cells
<--didn't grow very well due to power outage
Group A: Assemble bioreactors
09:50 Group A: Autoclave
10:00 Presentation Presentation Presentation
11:00 Group A: Install bioreactors
12:00
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K91 cells
17:00 SH: Inoculation




NO PRESENTATION

Day 5 (April 9th, Sat)

Runs 10, 11, 12 ' '
07:30
08:00
09:00 SH: Colony check
09:30
09:50
10:00
10:30
11:10
15:30
16:50
17:00
NO PRESENTATION


Day 6 (April 10th, Mon)

Runs ' ' 13, 14, 15
07:30
08:00
09:00
09:30 Group B: Assemble bioreactors
09:50 Group B: Autoclve
10:00
10:30
11:10 Group B: Install bioreactors
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K19 cells
17:00 SH: Inoculation
10:00 - 11:00 Presentation (Rm 4.303)
 # DOE Step 3. Analysis of Responses (Part I): Fit Summary and Model Selection


Day 7 (April 11th, Tue)

Runs ' 13, 14, 15 16, 17, 18
07:30 SH: Prepare hight density K19 cells
08:00 SH: Prepare dilution tubes
09:00 SH: Sampling
09:30 Ann: Phage dilution Group A: Assemble bioreactors
09:50 Ann: OD of HD cells Group A: Autoclve
10:00 Ann: Dry plates
10:30 Ann: Infect K19 cells
11:10 Ann: Spot titer Group A: Install bioreactors
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K19 cells
17:00 SH: Inoculation
10:00 - 11:00 Presentation (Rm 4.303)
 # DOE Step 3. Analysis of Responses (Part II): ANOVA, Diagnostics, and Model graphs

Day 8 (April 12th, Wed)

Runs 13, 14, 15 16, 17, 18 19, 20
07:30 SH: Prepare hight density K19 cells
08:00 SH: Prepare dilution tubes
09:00 Ann: Colony check SH: Sampling
09:30 Ann: Phage dilution Group B: Assemble bioreactors
09:50 Ann: OD of HD cells Group B: Autoclve
10:00 Ann: Dry plates
10:30 Ann: Infect K19 cells
11:10 Ann: Spot titer Group B: Install bioreactors
15:30 SH: Thaw stock
16:50 SH: Pre-culture for HD K19 cells
17:00 SH: Inoculation
10:00 - 11:00 Presentation (Rm 4.303)
 # DOE Step 4. Optimization

Day 9 (April 13th, Thu)

Runs 16, 17, 18 19, 20 '
07:30 SH: Prepare hight density K19 cells
08:00 SH: Prepare dilution tubes
09:00 Group A: Colony check SH: Sampling
09:30 Ann: Phage dilution
09:50 Ann: OD of HD cells
10:00 Ann: Dry plates
10:30 Ann: Infect K19 cells
11:10 Ann: Spot titer
15:30
16:50
17:00
10:00 - 11:00 Presentation (Rm 4.303)
 # Case Studies: Publication

Day 10 (April 14th, Fri)

Runs 19, 20 ' '
07:30
08:00
09:00 Group B: Colony check
09:30
09:50
10:00
10:30
11:10
15:30
16:50
17:00
9:30 - 12:00 DOE analysis with workshop data (Rm 4.307 Western Lantern)

Helful links

  1. http://meta.wikimedia.org/wiki/Table
  2. http://excel2wiki.net/ <--- Use this (Copy and Paste Excel to wiki converter)!






Recently Edited Notebook Pages