User:GMcArthurIV: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
No edit summary
(86 intermediate revisions by 2 users not shown)
Line 1: Line 1:
__NOTOC__
·__NOTOC__
[[Image:OWWEmblem.png|thumb|left|George McArthur IV (photo to come)]]
{| class="wikitable" border="0" cellpadding="5" cellspacing="1" style="text-align:center"
!width=934px align="left" valign="top" style="background:#2B60DE; color:white"|
<span style='font-size:16.0pt'>
George McArthur IV<br>
</span>
|-
|}
<div style="padding: 10px; width: 914px; border: 5px solid #2B60DE;">
[[Image:George McArthur IV - Bayer Lab.JPG|thumb|225px|left|George McArthur, Whitaker International Fellow at Imperial College London]]
<center>
'''''Imagination is more important than knowledge.''''' <br />
'''''Knowledge is limited. Imagination encircles the world.''''' <br />
- Einstein <br />
</center>
<br />
<br />
<center>''Imagination is more important than knowledge. Knowledge is limited. Imagination encircles the world..''  –Albert Einstein</center>
<br />
<br />
Welcome! I'm a first-year grad student at Virginia Commonwealth University (VCU) in Richmond, VA and a member of Dr. Stephen Fong's ''Systems Bioengineering Lab'' in the Department of Chemical and Life Science EngineeringPlease feel free to [mailto:mcarthur@virginia.edu email me].
My research is focused on the development of genetically encoded molecular machines to control the expression and activity of metabolic pathways in microbes.  This is made possible largely by significant advances in computational, systems and synthetic biology.  I earned a BS in 2008 from the University of Virginia where I studied music, chemical engineering and biology and was mentored by Erik Fernandez (chemical engineering) and Jason Papin (biomedical engineering)I carried out my graduate research with [http://bayerlab.com/ Travis Bayer] (synthetic biology) at Imperial College London, where I was a Whitaker International Fellow, and with [http://www.systemsbiology.vcu.edu/ Steve Fong] at Virginia Commonwealth University (chemical engineering) where I earned my PhD in 2013. In addition to my research, I develop material for biology and biotechnology curricula. My research interests include:
<br />
<br />
==Research Interests==
<br />
My research is centered around two areas, cellular engineering and process engineering.  I am working towards an industrial-scale biofuel production process using biological, chemical and physical engineering principles.
<br />
===Microbial Cellular Engineering===
*Orthogonal gene expression
The conversion of renewable biomass to molecules suitable for liquid transportation fuel can be acheived via microbial metabolism.  However, this does not usually occur naturally in a single microorganism nor does it occur efficiently. Therefore, novel metabolism must be developed to realize the desired chemical transformation. [http://syntheticbiology.org/ Synthetic biology] (specifically, synthetic genomics) offers an approach to truly engineering metabolic pathways and related networks by providing well-characterized genetic modules that can be interchanged and composed into larger, more complex systems. Eventually, whole-cell systems may be engineered to function or behave in a predicted manner.
*Artificial gene networks
*Synthetic metagenomics
*Genome organization, refactoring & design
*Metabolic, organellar & enzyme engineering
*Genome-scale, single-cell characterization
<br />
==Education & Training==
'''Imperial College London ·''' ''London, UK'' '''·''' 2011 — 2012
*Whitaker International Fellow '''·''' Bioengineering
**Advised by Travis S. Bayer
 
'''Virginia Commonwealth University ·''' ''Richmond, VA'' '''·''' 2008 — 2013
*Ph.D. '''·''' Chemical and Biological Engineering
**Advised by Stephen S. Fong
*M.S. '''·''' Chemical Engineering
 
'''University of Virginia ·''' ''Charlottesville, VA'' '''·''' 2002 — 2008
*B.S. '''·''' Chemical Engineering, Music, Biology minor
**Advised by Erik J. Fernandez and Jason A. Papin


Synthetic biology requires a collection of existing biological components such as the [http://bioparts.org/ Registry of Standard Biological Parts]. In a similar spirit, this work will first generate a library of well-characterized components, the Engineered Genetic Module Archive (EGMA), which will be used in a non-standard chassis optimal for this particular bioprocess. The development of EGMA will rely on both rational design and directed evolution approaches. Furthermore, marine metagenomic research continually offers new genetic material that can be utilized to improve process efficiency. This archive of engineered genetic modules will allow the precise metabolic engineering necessary to achieve an economically viable yield, titer and rate.
<br />
===Biochemical Process Engineering===
==Publications==
Although engineered microorganisms may synthesize the desired product or products, separation processes are necessary for purification. In addition, the bioreactor in which the microbes are grown must be optimized for the particular process and the substrate must be appropriately treated upstream of the bioreactor. This work is focused on the development of an optimal bioreactor for the growth of the platform organism and the production of the desired product. In addition, a novel extraction system is being developed for the facile separation of product from culture broth.
*'''G.H. McArthur IV''', J.C. Anderson and S.S. Fong. (2013). Modulating bacterial gene expression with synthetic extended promoters. ''In preparation''.
*A.B. Fisher, Z.B. Canfield, L.C. Hayward, S.S. Fong and '''G.H. McArthur IV'''. (2013) [http://www.frontiersin.org/Journal/10.3389/fbioe.2013.00012/abstract ''ex vivo'' DNA assembly]. ''Front. Bioeng. Biotechnol.''
*M. Montague, '''G.H. McArthur 4th''', C.S. Cockell, J. Held, W. Marshall, L.A. Sherman, N. Wang, W.L. Nicholoson, D. Tarjan and J. Cumbers. (2012). [http://online.liebertpub.com/doi/abs/10.1089/ast.2012.0829 The role of synthetic biology for in situ resource utilization (ISRU)]. ''Astrobiology''.
*'''G.H. McArthur 4th''' and S.S. Fong. (2010). [http://www.hindawi.com/journals/jbb/2010/459760.abs.html Toward engineering synthetic microbial metabolism]. ''J. Biomed. Biotechnol.'' doi:10.1155/2010/459760.
<br />
<br />
==Presentations==
==Presentations==
*Talk/poster - [http://parts.mit.edu/igem07/index.php/Presentations Harvesting cellulose and light to power butanol biosynthesis: A synthetic biology approach to metabolic engineering], [http://parts.mit.edu/igem07/index.php/Main_Page iGEM 2007]
*Poster - Orthogonal and tunable expression of metabolic pathways, Synthetic Biology 6.0. Imperial College, London, UK, 9-11 July 2013
*Poster - Harvesting cellulose and light to power butanol biosynthesis: A synthetic biology approach to metabolic engineering, [http://www.ibeweb.org/ IBE] 2008 annual meeting
*Poster - Predictable gene expression using extended promoters and orthogonal cellular machinery, Cell Factories and Biosustainability. Favrholm, Copenhagen, DK, 5-8 May 2013
*Talk - [http://tv.theiet.org/technology/electronics/1199.cfm The Virginia Genetically Engineered Machine Team], [http://conferences.theiet.org/biosysbio/ BioSysBio] 2008
*Poster - The development of a genetically encoded, function-based taxol biosensor, Metabolic Engineering IX. Biarritz, FR, 3-7 June 2012
*Poster - A bottom-up approach to synthetic biology education: From iGEM teams to undergraduate curricula, [http://sb4.biobricks.org/ Synthetic Biology 4.0]
*Poster - An orthogonal transcription platform for fine-tuning gene expression, Synthetic Biology 5.0. Stanford University, Stanford, CA, 15-17 June 2011
<br />
*Poster (invited) - A synthetic platform for controlling gene expression, Workshop: What are the potential roles of synthetic biology in NASA's mission?, 30-31 October 2010, NASA Ames Center, Moffett Field, CA
==Education==
*Poster - Modulating gene expression in ''Escherichia coli'' with synthetic UP elements, BIOFAB 2010 Community Meeting, 19-20 July 2010, Emeryville, CA
===Virginia Commonwealth University===
*Poster - Modulating gene expression in ''Escherichia coli'' with synthetic UP elements, ASM 2010, 23-27 May 2010, San Diego, CA
*Ph.D., Chemical and Life Science Engineering
*Poster - ''Chlamydomonas reinhardtii'' as a photosynthetic cellular chassis and power supply for synthetic biological systems, BioSysBio 2009, 23-25 March 2009, Cambridge University, Cambridge, UK
*Poster - ''Chlamydomonas reinhardtii'' as a platform for the direct photosynthesis of advanced biofuels, Institute of Biological Engineering 2009 annual meeting, 19-22 March 2009, Santa Clara, CA
*Poster - A bottom-up approach to synthetic biology education: From iGEM teams to undergraduate curricula, Synthetic Biology 4.0, 10-12 October 2008, HKUST, Hong Kong, China
*Talk - [http://tv.theiet.org/technology/electronics/1199.cfm The Virginia Genetically Engineered Machine Team], BioSysBio 2008, 20-22 April 2008, Imperial College, London, UK
*Poster - Harvesting cellulose and light to power butanol biosynthesis: A synthetic biology approach to metabolic engineering, Institute of Biological Engineering 2008 annual meeting, 6-9 March 2008, Chapel Hill, NC
*Talk/poster - Harvesting cellulose and light to power butanol biosynthesis: A synthetic biology approach to metabolic engineering, iGEM 2007, 3-4 November 2007, MIT, Cambridge, MA
<br />
==Development of Courses and Educational Programs==
I am the founder of the iGEM teams at the University of Virginia and Virginia Commonwealth University.  In addition, I have developed undergraduate and graduate courses in synthetic biology.
<br />
===Courses===
*Spring 2008, University of Virginia - [[CHE.496/2008| ''Biological Systems Design'']]
*Fall 2009, Virginia Commonwealth University - [[VCU/Courses/Synthetic Biology Fundamentals| ''Synthetic Biology Fundamentals'']]
<br />
<br />
===University of Virginia (2008)===
===iGEM Teams===
*B.S., Chemical Engineering (Biotechnology Concentration}
*[http://parts.mit.edu/igem07/index.php/Virginia University of Virginia 2007]
*B.A., Music (Composition Concentration)
*[http://2008.igem.org/Team:Virginia University of Virginia 2008]
*Minor in Biology
*[http://2009.igem.org/Team:Virginia_Commonwealth Virginia Commonwealth University 2009]
*Undergraduate Thesis Portfolio
*[http://openwetware.org/wiki/Virginia_United/2010 Virginia United 2010]
**The Development of a First Course in the Fundamentals of Synthetic Biology at the University of Virginia
*[http://2011.igem.org/Team:VCU Virginia Commonwealth University 2011]
***[[CHE.496/2008| ''Biological Systems Design'']] was offered in Spring 2008!
 
**The VGEM Team: A Model for Enhancing Engineering Education
**A Regulatory Framework for the Constructive Development of Synthetic Biology
<br />
<br />
==Links==
===Press===
*[http://www.seas.virginia.edu/VGEM Virginia Genetically Engineered Machine Team]  
*[http://www.virginia.edu/uvatoday/newsRelease.php?id=4051 "Students Advance Synthetic Biology Research at U.Va. (Jan. 2008)]
*[http://www.syntheticbiology.org Synthetic Biology community]
*[http://www.virginia.edu/uvatoday/newsRelease.php?id=7770 "Ambitious Undergraduate Research Breaks New Ground" (Feb. 2009)]
*[http://www.syntheticgenomics.com Synthetic Genomics (the company)]
*[http://www.washingtonpost.com/wp-dyn/content/article/2009/10/22/AR2009102204628.html "New works of science nonfiction: U-Va. students are using 'BioBricks' to try to build an original life form" (Oct. 2009)]
*[http://www.sorcerer2expedition.org/version1/HTML/main.htm Sorcerer II Expedition]
*[http://www.virginia.edu/uvatoday/newsRelease.php?id=10310 "U.Va. Team Strikes Gold in Genetically Engineered Machine Competition" (Nov. 2009)]
*[http://mmbl.uprm.edu Molecular Marine Biology Laboratory]
*[http://www.uvamagazine.org/features/article/reinventing_life/ "Reinventing Life: The Strange and Wondrous Science of Biological Technology" (UVa, Spring 2010)]
*[http://www.marinebiotech.org Marine Biotech]
*[https://www.vbi.vt.edu/public_relations/press_releases/virginia_united_igem_team "Virginia United undergraduate iGEM team to compete in synthetic biology competition" (May 2010)]
*[http://ibe.org Institute of Biological Engineering]
*[http://www.vtnews.vt.edu/articles/2010/06/2010-445.html "Virginia Tech undergraduates join Virginia United iGEM team for national synthetic biology competition" (June 2010)]
*[http://www.gossamerfidelity.com Gossamer Fidelity (the band)]
*[http://www.news.vcu.edu/news/VCU_to_participate_in_a_fourschool_coalition_to_tackle_competitive "VCU to Participate in a Four-School Coalition to Tackle Competitive iGEM Competition" (July 2010)]
*[http://blogs.hsc.edu/biology/2010/11/03/vcu-synthetic-biology-team-leaders-visit-h-sc/ "VCU synthetic biology team leaders visit H-SC" (Nov. 2010)]  
*[http://www.news.vcu.edu/news/VCU_to_participate_in_a_fourschool_coalition_to_tackle_competitive "Virginia Team Wins Bronze Medal in Genetically Engineered Machines Competition" (Dec. 2010)]

Revision as of 12:14, 11 November 2013

·

George McArthur IV

George McArthur, Whitaker International Fellow at Imperial College London

Imagination is more important than knowledge.
Knowledge is limited. Imagination encircles the world.
- Einstein



My research is focused on the development of genetically encoded molecular machines to control the expression and activity of metabolic pathways in microbes. This is made possible largely by significant advances in computational, systems and synthetic biology. I earned a BS in 2008 from the University of Virginia where I studied music, chemical engineering and biology and was mentored by Erik Fernandez (chemical engineering) and Jason Papin (biomedical engineering). I carried out my graduate research with Travis Bayer (synthetic biology) at Imperial College London, where I was a Whitaker International Fellow, and with Steve Fong at Virginia Commonwealth University (chemical engineering) where I earned my PhD in 2013. In addition to my research, I develop material for biology and biotechnology curricula. My research interests include:


  • Orthogonal gene expression
  • Artificial gene networks
  • Synthetic metagenomics
  • Genome organization, refactoring & design
  • Metabolic, organellar & enzyme engineering
  • Genome-scale, single-cell characterization


Education & Training

Imperial College London · London, UK · 2011 — 2012

  • Whitaker International Fellow · Bioengineering
    • Advised by Travis S. Bayer

Virginia Commonwealth University · Richmond, VA · 2008 — 2013

  • Ph.D. · Chemical and Biological Engineering
    • Advised by Stephen S. Fong
  • M.S. · Chemical Engineering

University of Virginia · Charlottesville, VA · 2002 — 2008

  • B.S. · Chemical Engineering, Music, Biology minor
    • Advised by Erik J. Fernandez and Jason A. Papin


Publications


Presentations

  • Poster - Orthogonal and tunable expression of metabolic pathways, Synthetic Biology 6.0. Imperial College, London, UK, 9-11 July 2013
  • Poster - Predictable gene expression using extended promoters and orthogonal cellular machinery, Cell Factories and Biosustainability. Favrholm, Copenhagen, DK, 5-8 May 2013
  • Poster - The development of a genetically encoded, function-based taxol biosensor, Metabolic Engineering IX. Biarritz, FR, 3-7 June 2012
  • Poster - An orthogonal transcription platform for fine-tuning gene expression, Synthetic Biology 5.0. Stanford University, Stanford, CA, 15-17 June 2011
  • Poster (invited) - A synthetic platform for controlling gene expression, Workshop: What are the potential roles of synthetic biology in NASA's mission?, 30-31 October 2010, NASA Ames Center, Moffett Field, CA
  • Poster - Modulating gene expression in Escherichia coli with synthetic UP elements, BIOFAB 2010 Community Meeting, 19-20 July 2010, Emeryville, CA
  • Poster - Modulating gene expression in Escherichia coli with synthetic UP elements, ASM 2010, 23-27 May 2010, San Diego, CA
  • Poster - Chlamydomonas reinhardtii as a photosynthetic cellular chassis and power supply for synthetic biological systems, BioSysBio 2009, 23-25 March 2009, Cambridge University, Cambridge, UK
  • Poster - Chlamydomonas reinhardtii as a platform for the direct photosynthesis of advanced biofuels, Institute of Biological Engineering 2009 annual meeting, 19-22 March 2009, Santa Clara, CA
  • Poster - A bottom-up approach to synthetic biology education: From iGEM teams to undergraduate curricula, Synthetic Biology 4.0, 10-12 October 2008, HKUST, Hong Kong, China
  • Talk - The Virginia Genetically Engineered Machine Team, BioSysBio 2008, 20-22 April 2008, Imperial College, London, UK
  • Poster - Harvesting cellulose and light to power butanol biosynthesis: A synthetic biology approach to metabolic engineering, Institute of Biological Engineering 2008 annual meeting, 6-9 March 2008, Chapel Hill, NC
  • Talk/poster - Harvesting cellulose and light to power butanol biosynthesis: A synthetic biology approach to metabolic engineering, iGEM 2007, 3-4 November 2007, MIT, Cambridge, MA


Development of Courses and Educational Programs

I am the founder of the iGEM teams at the University of Virginia and Virginia Commonwealth University. In addition, I have developed undergraduate and graduate courses in synthetic biology.

Courses


iGEM Teams


Press