User:Gevorg - Revision history

http://www.openwetware.org/index.php?title=User:Gevorg&feed=atom&action=history User:Gevorg - Revision history 2013-05-18T16:31:08Z Revision history for this page on the wiki MediaWiki 1.13.2 http://www.openwetware.org/index.php?title=User:Gevorg&diff=204299&oldid=prev Gevorg at 21:30, 11 May 2008 2008-05-11T21:30:47Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:30, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 15:</td> <td colspan="2" class="diff-lineno">Line 15:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>| [[Image:Drakonchik.small.<del class="diffchange diffchange-inline">jpg‎| http://www.gevorggrigoryan.com/drawcoil/</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>| [[Image:Drakonchik.small.<ins class="diffchange diffchange-inline">jpg</ins>]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=204298&oldid=prev Gevorg at 21:28, 11 May 2008 2008-05-11T21:28:11Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:28, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 15:</td> <td colspan="2" class="diff-lineno">Line 15:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>| [[Image:Drakonchik.small.jpg‎]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>| [[Image:Drakonchik.small.jpg‎<ins class="diffchange diffchange-inline">| http://www.gevorggrigoryan.com/drawcoil/</ins>]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=204297&oldid=prev Gevorg at 21:26, 11 May 2008 2008-05-11T21:26:59Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:26, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 15:</td> <td colspan="2" class="diff-lineno">Line 15:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>| [[Image:<del class="diffchange diffchange-inline">Helical-wheel</del>.<del class="diffchange diffchange-inline">gif|200px</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>| [[Image:<ins class="diffchange diffchange-inline">Drakonchik</ins>.<ins class="diffchange diffchange-inline">small.jpg‎</ins>]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=204294&oldid=prev Gevorg at 21:23, 11 May 2008 2008-05-11T21:23:35Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:23, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><b>Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0] - a web-based program for building helical wheel diagrams!</b><br><br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">{| width="100%"</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">|-valign="top"</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">| </ins><b>Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0] - a web-based program for building helical wheel diagrams!</b><br><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]! It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">| [[Image:Helical-wheel.gif|200px]]</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|}</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=204293&oldid=prev Gevorg at 21:17, 11 May 2008 2008-05-11T21:17:48Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:17, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]<del class="diffchange diffchange-inline">. </del>It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><b>Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0] - a web-based program for building helical wheel diagrams!</b><br><br></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorggrigoryan.com/drawcoil/ DrawCoil 1.0]<ins class="diffchange diffchange-inline">! </ins>It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=204291&oldid=prev Gevorg at 21:12, 11 May 2008 2008-05-11T21:12:52Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:12, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 6:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Intro ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Intro ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">Graduate </del>student in the Keating lab since the summer of 2003<del class="diffchange diffchange-inline">. I am involved in several projects </del>in the lab <del class="diffchange diffchange-inline">dealing </del>with <del class="diffchange diffchange-inline">theoretical and computational aspects </del>of protein design and protein interaction prediction. I received a Bachelor's degree in Biochemistry and one in Computer Science from University of Maryland Baltimore County in 2002.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">I am currently a postdoctoral fellow in [http://degrado.med.upenn.edu/index.php the DeGrado lab] at University of Pennsylvania. I am currently working on problems in engineering intermembrane as well as water-soluble proteins and design of protein-small molecule interactions. Prior to this, I was a graduate </ins>student in the Keating lab <ins class="diffchange diffchange-inline">at MIT (</ins>since the summer of 2003<ins class="diffchange diffchange-inline">), followed by a short time as a postdoctoral associate </ins>in the <ins class="diffchange diffchange-inline">same </ins>lab<ins class="diffchange diffchange-inline">. In my graduate work I dealt </ins>with <ins class="diffchange diffchange-inline">problems </ins>of protein design and protein interaction prediction<ins class="diffchange diffchange-inline">, which is detailed in my [http://www.gevorggrigoryan.com/grigoryan-thesis.pdf PhD Thesis]</ins>. I received a Bachelor's degree in Biochemistry and one in Computer Science from University of Maryland Baltimore County in 2002.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.<del class="diffchange diffchange-inline">gevorg</del>.<del class="diffchange diffchange-inline">org</del>/drawcoil/ DrawCoil 1.0]. It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.<ins class="diffchange diffchange-inline">gevorggrigoryan</ins>.<ins class="diffchange diffchange-inline">com</ins>/drawcoil/ DrawCoil 1.0]. It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Yay! Here is my [http://www.<del class="diffchange diffchange-inline">gevorg</del>.<del class="diffchange diffchange-inline">org</del>/grigoryan-thesis.pdf PhD Thesis].<br><br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Yay! Here is my [http://www.<ins class="diffchange diffchange-inline">gevorggrigoryan</ins>.<ins class="diffchange diffchange-inline">com</ins>/grigoryan-thesis.pdf PhD Thesis].<br><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:footer-cap-2ndlevel.gif]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:footer-cap-2ndlevel.gif]]<br><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=204287&oldid=prev Gevorg at 21:01, 11 May 2008 2008-05-11T21:01:05Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:01, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{| width="100%"</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{| width="100%"</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>| [[Image:gevorg_picture.jpg|frame|center<del class="diffchange diffchange-inline">|Gevorg</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>| [[Image:gevorg_picture.jpg|frame|center]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>| {{KeatingLabToolbar}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>| {{KeatingLabToolbar}}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=204286&oldid=prev Gevorg at 20:53, 11 May 2008 2008-05-11T20:53:36Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 20:53, 11 May 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 61:</td> <td colspan="2" class="diff-lineno">Line 61:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Contact Info ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Contact Info ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">31 Ames Street</del>, Room <del class="diffchange diffchange-inline">68-604D</del><<del class="diffchange diffchange-inline">br</del>></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Department of Biochemistry and Biophysics<BR></ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">Cambridge</del>, <del class="diffchange diffchange-inline">MA 02142</del><<del class="diffchange diffchange-inline">br</del>></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Stellar-Chance Building</ins>, Room <ins class="diffchange diffchange-inline">1015</ins><<ins class="diffchange diffchange-inline">BR</ins>></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">617</del>-<del class="diffchange diffchange-inline">452</del>-<del class="diffchange diffchange-inline">4101</del><br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">422 Curie Blvd</ins>, <ins class="diffchange diffchange-inline">Philadelphia, PA 19107</ins><<ins class="diffchange diffchange-inline">BR</ins>></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>gevorg@mit.edu</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">443</ins>-<ins class="diffchange diffchange-inline">629</ins>-<ins class="diffchange diffchange-inline">1227</ins><br></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>gevorg@<ins class="diffchange diffchange-inline">alum.</ins>mit.edu<ins class="diffchange diffchange-inline"><br></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">gevorg@mail.med.upenn.edu<br></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">gevorg.grigoryan@gmail.com</ins></div></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=175445&oldid=prev Gevorg at 22:31, 19 December 2007 2007-12-19T22:31:09Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 22:31, 19 December 2007</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorg.org/ DrawCoil 1.0]. It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorg.org<ins class="diffchange diffchange-inline">/drawcoil</ins>/ DrawCoil 1.0]. It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Helical-wheel.gif|200px]]<br><br></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>  </table>

Gevorg http://www.openwetware.org/index.php?title=User:Gevorg&diff=175444&oldid=prev Gevorg at 22:30, 19 December 2007 2007-12-19T22:30:40Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 22:30, 19 December 2007</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Recent Work ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== DrawCoil 1.0 ===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorg.org/ DrawCoil 1.0]. It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Helical wheel diagrams come in very handy when one wants to do a quick-and-dirty (but often insightful) analysis of sequence/structure relationships in coiled-coil oligomers. Frustratingly, to this day I have not been able to find a program that builds helical wheel diagrams. So I decided to write one myself and make it available on the net, so that other people don't have to go through the pain of building helical wheel diagrams from scratch every time. Introducing [http://www.gevorg.org/ DrawCoil 1.0]. It is very simple to use (literally, just paste in the sequences and hit "submit"), but at the same time it is very highly configurable and you can control residue coloring, line widths, whether the bridges are shown and so on. Plus, new controllable features are easy to incorporate, so if there happen to be some commonly needed options, I'll try to put them in.<ins class="diffchange diffchange-inline"><br></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">[[Image:Helical-wheel.gif|200px]]<br><br></ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== I defended! ===</div></td></tr>  </table>

Gevorg