User:Hussein Alasadi/Notebook/stephens/2013/10/16: Difference between revisions
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* '''We then evolve the populations for g generations with recombination''' | * '''We then evolve the populations for g generations with recombination''' | ||
To do this we can use Kessner's [http://arxiv.org/abs/1310.3234 Forqs]. Forqs allows the user to specify the recombination rate file | To do this we can use Kessner's [http://arxiv.org/abs/1310.3234 Forqs]. Forqs allows the user to specify the recombination rate file which might be useful in the future. | ||
* '''Simulate pooled sequencing''' | * '''Simulate pooled sequencing''' | ||
(1) draw a coverage from <math> Pois(\lambda) </math> where <math> \lambda \approx 40-50 </math> | |||
Revision as of 21:48, 16 October 2013
Analyzing pooled sequenced data with selection | <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html> |
Simulating evolution and then pooled sequencing
To do this we can use Dick Hudson's MS to lay down neutral variants (but the distribution really does not matter).
To do this we can use Kessner's Forqs. Forqs allows the user to specify the recombination rate file which might be useful in the future.
(1) draw a coverage from [math]\displaystyle{ Pois(\lambda) }[/math] where [math]\displaystyle{ \lambda \approx 40-50 }[/math]
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