User:Ilya: Difference between revisions

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==Research==
__NOTOC__
[[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for the [http://parts.mit.edu/ Registry of Standard Biological Parts].
Contact Ilya Sytchev (Илья Сычёв):
*<math>\mbox{hackdna}</math>@<math>\mbox{gmail.com}</math>
*[[Special:Emailuser/Ilya|send me an email via OpenWetWare]]


==OpenWetWare==
==Activities==
===Ideas===
====Searching====
*[http://wiki.lumrix.net/en/ LuMriX Wikipedia Search] - dynamic search in style of Google Suggest
*[http://www.wikiwax.com/ WikiWax] - your quick index to Wikipedia (based on [http://lookahead.surfwax.com/ LookAhead by SurfWax])


====Misc====
===Current===
* '''blacklist''' certain pages from public viewing and/or editing ([http://mail.wikipedia.org/pipermail/mediawiki-l/2004-August/000874.html Blacklist pages from viewing])
Developing an integrated data management and analysis system for the [http://winhide.wordpress.com/2011/04/13/setting-up-a-stem-cell-commons/ Stem Cell Commons] project.
* use "endy members group" to restrict access to certain pages


===Resources===
===Previous===
*[http://siphs.com/ Siphs] is a peer enabled search engine and online reference for the life sciences research community.
*Systems Engineer at [http://www.genstruct.com/ Genstruct]
*[http://collaboration.wikicities.com/ MetaCollab] a collaboration on collaboration.
*[[User:Ilya/OpenWetWare|OpenWetWare]]
==Software==
*Computing at the Endy Lab:
===Firefox===
**[[User:Ilya/BioBrick aligner|BioBrick aligner]]
*[http://biobar.mozdev.org/ Biobar]
**[[Endy:Data storage|Data storage]]
*[http://lsid.mozdev.org/ LSID]
**[[User:Ilya/Lab network|Lab network]]
*[http://biofox.mozdev.org/ bioFOX]
**[[User:Ilya/Win.mit.edu|WIN.MIT.EDU]]
===MySQL===
*[[User:Ilya/Yeast/Mating_pheromone_response_pathway|Mating pheromone response pathway]] analysis across [[User:Ilya/Yeast|yeast]] and [[User:Ilya/Yeast/Phylogeny|related species]]
*[http://www.cs.wcupa.edu/~rkline/mysql-java-lin.html Java/MySQL on Linux]
*[http://www.kitebird.com/articles/mysql-xml.html Using XML with MySQL]


==Web 2.0==
==Miscellaneous==
*[http://www.paulgraham.com/web20.html Web 2.0] by Paul Graham: "Web 2.0 means using the web the way it's meant to be used. The "trends" we're seeing now are simply the inherent nature of the web emerging from under the broken models that got imposed on it during the Bubble."
<html>
*[http://www.oreillynet.com/pub/a/oreilly/tim/news/2005/09/30/what-is-web-20.html What Is Web 2.0] by Tim O'Reilly
<a href="http://www2.clustrmaps.com/user/3e416041">
*[[Wikipedia:JSON|JSON]] is a data interchange format that can be trivially parsed by JavaScript, with JavaScript's built in eval() procedure.
<img style="float: right" src="http://www2.clustrmaps.com/stats/maps-no_clusters/openwetware.org-wiki-User-Ilya-thumb.jpg" />
*[[Wikipedia:YAML|YAML]] is a data serialization and lightweight markup language that takes concepts from languages such as XML, C, Python, and Perl.
</a>
*[http://www.onlinetools.org/articles/unobtrusivejavascript/ Unobtrusive Javascript]
</html>
*[http://reddit.com/ reddit] - what's new online
 
===XMLHTTP===
*[[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for [[Synthetic Biology]] ([[User:Ilya/Registry|Registry notes]])
*[[Wikipedia:XMLHTTP|XMLHTTP]] is a set of APIs that can be used by JavaScript and other web browser scripting languages to transfer XML to and from a web server using HTTP.
*[[User:Ilya/Notes|Notes]]
*[http://adaptivepath.com/publications/essays/archives/000385.php Ajax: A New Approach to Web Applications]
*[[User:Ilya/Todo|Todo]]
*[http://www.modernmethod.com/sajax/ SAJAX]: Simple Ajax Toolkit
*[[User:Ilya/Sandbox|Sandbox]]
*[http://dojotoolkit.com/ Dojo]
 
*[http://www.intertwingly.net/blog/2005/03/16/AJAX-Considered-Harmful AJAX-Considered-Harmful]
[[Category:Steering Committee member]] [[Category:Bioinformaticians]]
*[http://twilightuniverse.com/2005/05/sack-of-ajax/ SACK]: Simple AJAX Code Kit
===Web Services===
*[http://webservices.xml.com/pub/a/ws/2003/09/30/soa.html Service-Oriented Architecture]
===Applications===
*[http://www.meebo.com/ Meebo]: Web 2.0 IM client
*[http://slashdot.org/article.pl?sid=05/09/29/000223&tid=126 Early AJAX Office Apps]
*[http://www.bindows.net/ Bindows]: desktop web applications framework

Revision as of 18:35, 28 October 2012

Contact Ilya Sytchev (Илья Сычёв):

Activities

Current

Developing an integrated data management and analysis system for the Stem Cell Commons project.

Previous

Miscellaneous

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