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| ==Research==
| | __NOTOC__ |
| [[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for the [http://parts.mit.edu/ Registry of Standard Biological Parts]. | | Contact Ilya Sytchev (Илья Сычёв): |
| | *<math>\mbox{hackdna}</math>@<math>\mbox{gmail.com}</math> |
| | *[[Special:Emailuser/Ilya|send me an email via OpenWetWare]] |
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| ==OpenWetWare== | | ==Activities== |
| *[http://meta.wikimedia.org/wiki/Wikimania_2006 Wikimania 2006]: Boston, August 2006
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| ===Ideas===
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| *[[Ideas_for_Wiki|Ideas for Wiki]] - local version
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| ====Searching====
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| *[http://wiki.lumrix.net/en/ LuMriX Wikipedia Search] - dynamic search in style of Google Suggest
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| *[http://www.wikiwax.com/ WikiWax] - your quick index to Wikipedia (based on [http://lookahead.surfwax.com/ LookAhead by SurfWax])
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| *[http://ajaxpatterns.org/Suggestion Suggestion] - Ajax Patterns
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| ====Misc====
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| *[http://www.google.com/analytics/ Google Analytics]
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| * '''blacklist''' certain pages from public viewing and/or editing ([http://mail.wikipedia.org/pipermail/mediawiki-l/2004-August/000874.html Blacklist pages from viewing])
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| * use "endy members group" to restrict access to certain pages
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| ===Resources===
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| *[http://siphs.com/ Siphs] is a peer enabled search engine and online reference for the life sciences research community.
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| *[http://collaboration.wikicities.com/ MetaCollab] a collaboration on collaboration.
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| ==Software== | | ===Current=== |
| ===Firefox===
| | Developing an integrated data management and analysis system for the [http://winhide.wordpress.com/2011/04/13/setting-up-a-stem-cell-commons/ Stem Cell Commons] project. |
| *[http://biobar.mozdev.org/ Biobar]
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| *[http://lsid.mozdev.org/ LSID]
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| *[http://biofox.mozdev.org/ bioFOX]
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| ===MySQL===
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| *[http://www.cs.wcupa.edu/~rkline/mysql-java-lin.html Java/MySQL on Linux]
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| *[http://www.kitebird.com/articles/mysql-xml.html Using XML with MySQL]
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| ==Web 2.0== | | ===Previous=== |
| *[http://www.paulgraham.com/web20.html Web 2.0] by Paul Graham: "Web 2.0 means using the web the way it's meant to be used. The "trends" we're seeing now are simply the inherent nature of the web emerging from under the broken models that got imposed on it during the Bubble." | | *Systems Engineer at [http://www.genstruct.com/ Genstruct] |
| *[http://www.oreillynet.com/pub/a/oreilly/tim/news/2005/09/30/what-is-web-20.html What Is Web 2.0] by Tim O'Reilly | | *[[User:Ilya/OpenWetWare|OpenWetWare]] |
| *[[Wikipedia:JSON|JSON]] is a data interchange format that can be trivially parsed by JavaScript, with JavaScript's built in eval() procedure. | | *Computing at the Endy Lab: |
| *[[Wikipedia:YAML|YAML]] is a data serialization and lightweight markup language that takes concepts from languages such as XML, C, Python, and Perl. | | **[[User:Ilya/BioBrick aligner|BioBrick aligner]] |
| *[http://www.onlinetools.org/articles/unobtrusivejavascript/ Unobtrusive Javascript] | | **[[Endy:Data storage|Data storage]] |
| *[http://reddit.com/ reddit] - what's new online
| | **[[User:Ilya/Lab network|Lab network]] |
| ===XMLHTTP===
| | **[[User:Ilya/Win.mit.edu|WIN.MIT.EDU]] |
| *[[Wikipedia:XMLHTTP|XMLHTTP]] is a set of APIs that can be used by JavaScript and other web browser scripting languages to transfer XML to and from a web server using HTTP.
| | *[[User:Ilya/Yeast/Mating_pheromone_response_pathway|Mating pheromone response pathway]] analysis across [[User:Ilya/Yeast|yeast]] and [[User:Ilya/Yeast/Phylogeny|related species]] |
| *[http://adaptivepath.com/publications/essays/archives/000385.php Ajax: A New Approach to Web Applications] | |
| *[http://www.modernmethod.com/sajax/ SAJAX]: Simple Ajax Toolkit
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| *[http://dojotoolkit.com/ Dojo] | |
| *[http://www.intertwingly.net/blog/2005/03/16/AJAX-Considered-Harmful AJAX-Considered-Harmful]
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| *[http://www.xml.com/pub/a/2005/11/09/fixing-ajax-xmlhttprequest-considered-harmful.html Fixing AJAX]
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| *[http://twilightuniverse.com/2005/05/sack-of-ajax/ SACK]: Simple AJAX Code Kit
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| *[http://www.ajaxpatterns.org/ Ajax Patterns]
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| ===Web Services=== | | ==Miscellaneous== |
| *[http://webservices.xml.com/pub/a/ws/2003/09/30/soa.html Service-Oriented Architecture]
| | <html> |
| ===Applications=== | | <a href="http://www2.clustrmaps.com/user/3e416041"> |
| *[http://www.meebo.com/ Meebo]: Web 2.0 IM client
| | <img style="float: right" src="http://www2.clustrmaps.com/stats/maps-no_clusters/openwetware.org-wiki-User-Ilya-thumb.jpg" /> |
| *[http://slashdot.org/article.pl?sid=05/09/29/000223&tid=126 Early AJAX Office Apps]
| | </a> |
| *[http://www.bindows.net/ Bindows]: desktop web applications framework | | </html> |
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| | *[[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for [[Synthetic Biology]] ([[User:Ilya/Registry|Registry notes]]) |
| | *[[User:Ilya/Notes|Notes]] |
| | *[[User:Ilya/Todo|Todo]] |
| | *[[User:Ilya/Sandbox|Sandbox]] |
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| | [[Category:Steering Committee member]] [[Category:Bioinformaticians]] |
