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| ==Research==
| | __NOTOC__ |
| [[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for the [http://parts.mit.edu/ Registry of Standard Biological Parts]. | | Contact Ilya Sytchev (Илья Сычёв): |
| | *<math>\mbox{hackdna}</math>@<math>\mbox{gmail.com}</math> |
| | *[[Special:Emailuser/Ilya|send me an email via OpenWetWare]] |
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| ==OpenWetWare== | | ==Activities== |
| *[http://meta.wikimedia.org/wiki/Wikimania_2006 Wikimania 2006]: Boston, August 2006
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| *[[Wikipedia:Wikipedia:Tools/Editing_Tools|Editing tools]], including [http://diberri.dyndns.org/html2wiki.html html2wiki] converter based on HTML::WikiConverter Perl module
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| ===Ideas===
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| *[[Ideas_for_Wiki|Ideas for Wiki]] - local version
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| *[[Wikipedia|Journal_impact_factor] - a metric of success?
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| ====Searching====
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| *[http://wiki.lumrix.net/en/ LuMriX Wikipedia Search] - dynamic search in style of Google Suggest
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| *[http://www.wikiwax.com/ WikiWax] - your quick index to Wikipedia (based on [http://lookahead.surfwax.com/ LookAhead by SurfWax])
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| *[http://ajaxpatterns.org/Suggestion Suggestion] - Ajax Patterns
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| ====Misc====
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| *[http://www.google.com/analytics/ Google Analytics]
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| * '''blacklist''' certain pages from public viewing and/or editing ([http://mail.wikipedia.org/pipermail/mediawiki-l/2004-August/000874.html Blacklist pages from viewing])
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| * use "endy members group" to restrict access to certain pages
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| ===Resources=== | | ===Current=== |
| *[http://siphs.com/ Siphs] is a peer enabled search engine and online reference for the life sciences research community.
| | Developing an integrated data management and analysis system for the [http://winhide.wordpress.com/2011/04/13/setting-up-a-stem-cell-commons/ Stem Cell Commons] project. |
| *[http://collaboration.wikicities.com/ MetaCollab] a collaboration on collaboration.
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| ==Software== | | ===Previous=== |
| ===Firefox===
| | *Systems Engineer at [http://www.genstruct.com/ Genstruct] |
| *[http://biobar.mozdev.org/ Biobar] | | *[[User:Ilya/OpenWetWare|OpenWetWare]] |
| *[http://lsid.mozdev.org/ LSID] | | *Computing at the Endy Lab: |
| *[http://biofox.mozdev.org/ bioFOX] | | **[[User:Ilya/BioBrick aligner|BioBrick aligner]] |
| ===MySQL===
| | **[[Endy:Data storage|Data storage]] |
| *[http://www.cs.wcupa.edu/~rkline/mysql-java-lin.html Java/MySQL on Linux] | | **[[User:Ilya/Lab network|Lab network]] |
| *[http://www.kitebird.com/articles/mysql-xml.html Using XML with MySQL] | | **[[User:Ilya/Win.mit.edu|WIN.MIT.EDU]] |
| | *[[User:Ilya/Yeast/Mating_pheromone_response_pathway|Mating pheromone response pathway]] analysis across [[User:Ilya/Yeast|yeast]] and [[User:Ilya/Yeast/Phylogeny|related species]] |
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| ==Web 2.0== | | ==Miscellaneous== |
| *[http://www.paulgraham.com/web20.html Web 2.0] by Paul Graham: "Web 2.0 means using the web the way it's meant to be used. The "trends" we're seeing now are simply the inherent nature of the web emerging from under the broken models that got imposed on it during the Bubble."
| | <html> |
| *[http://www.oreillynet.com/pub/a/oreilly/tim/news/2005/09/30/what-is-web-20.html What Is Web 2.0] by Tim O'Reilly
| | <a href="http://www2.clustrmaps.com/user/3e416041"> |
| *[[Wikipedia:JSON|JSON]] is a data interchange format that can be trivially parsed by JavaScript, with JavaScript's built in eval() procedure.
| | <img style="float: right" src="http://www2.clustrmaps.com/stats/maps-no_clusters/openwetware.org-wiki-User-Ilya-thumb.jpg" /> |
| *[[Wikipedia:YAML|YAML]] is a data serialization and lightweight markup language that takes concepts from languages such as XML, C, Python, and Perl.
| | </a> |
| *[http://www.onlinetools.org/articles/unobtrusivejavascript/ Unobtrusive Javascript]
| | </html> |
| *[http://reddit.com/ reddit] - what's new online
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| *[http://declanbutler.info/blog/?p=2 Nature on blogging in science]
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| **From [http://www.nature.com/nature/journal/v438/n7068/full/438547a.html Science in the web age: Science in the web age: The expanding electronic universe]: "Young scientists are often '''reluctant to express their thoughts online''' out of fear that it is somehow inappropriate, or even possibly damaging to their careers."
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| **From [http://www.nature.com/nature/journal/v438/n7068/full/438548a.html Science in the web age: Joint efforts]: "...younger researchers, in particular, are '''concerned that scientists are missing out on new ways to communicate''' with each other and the public."
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| ===XMLHTTP===
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| *[[Wikipedia:XMLHTTP|XMLHTTP]] is a set of APIs that can be used by JavaScript and other web browser scripting languages to transfer XML to and from a web server using HTTP.
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| *[http://adaptivepath.com/publications/essays/archives/000385.php Ajax: A New Approach to Web Applications]
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| *[http://www.modernmethod.com/sajax/ SAJAX]: Simple Ajax Toolkit
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| *[http://dojotoolkit.com/ Dojo]
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| *[http://www.intertwingly.net/blog/2005/03/16/AJAX-Considered-Harmful AJAX-Considered-Harmful]
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| *[http://www.xml.com/pub/a/2005/11/09/fixing-ajax-xmlhttprequest-considered-harmful.html Fixing AJAX]
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| *[http://twilightuniverse.com/2005/05/sack-of-ajax/ SACK]: Simple AJAX Code Kit
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| *[http://www.ajaxpatterns.org/ Ajax Patterns]
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| ===Web Services===
| | *[[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for [[Synthetic Biology]] ([[User:Ilya/Registry|Registry notes]]) |
| *[http://webservices.xml.com/pub/a/ws/2003/09/30/soa.html Service-Oriented Architecture] | | *[[User:Ilya/Notes|Notes]] |
| ===Applications===
| | *[[User:Ilya/Todo|Todo]] |
| *[http://www.meebo.com/ Meebo]: Web 2.0 IM client | | *[[User:Ilya/Sandbox|Sandbox]] |
| *[http://slashdot.org/article.pl?sid=05/09/29/000223&tid=126 Early AJAX Office Apps] | | |
| *[http://www.bindows.net/ Bindows]: desktop web applications framework
| | [[Category:Steering Committee member]] [[Category:Bioinformaticians]] |
