User:Ilya/Notes/Software: Difference between revisions

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(New page: *[http://wwwhomes.uni-bielefeld.de/chase/biotool2web/ Biotool2Web]: Creating Simple Web Interfaces for Bioinformatics Applications *[http://modis.ispras.ru/sedna/index.htm Sedna] is an ope...)
 
 
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__NOTOC__
==Data visualization==
*[http://services.alphaworks.ibm.com/manyeyes/ Many Eyes] - a [http://many-eyes.com/ site] for sharing and commenting on visualizations by IBM
*[http://www.data360.co.uk/ Data360]
*[http://www.swivel.com/ Swivel]: YouTube for data - visualize and share your data with others
*[http://www.gapminder.org/ Gapminder]
*[http://processing.org/ Processing] is an open source programming language and environment for people who want to program images, animation, and interactions
**[http://www.oreilly.com/catalog/9780596514556/index.html Visualizing Data] - O'Reilly book
==Application servers==
[http://www.whitebeam.org/ Whitebeam] - open source; applications are written as a set of XML pages that contain embedded JavaScript
==Project management==
*[http://live.gnome.org/Planner Planner] is the GNOME project management tool
*[http://eventum.mysql.org/ Eventum] - web-based issue tracking system developed by MySQL
==Network==
*[http://etherape.sourceforge.net/ EtherApe] - a graphical network monitor
*[http://wireshark.org/ Wireshark]: network protocol analyzer (successor to [http://www.ethereal.com/ Ethereal])
*[http://tor.eff.org/ Tor]: an anonymous Internet communication system
==Bibliography==
*[http://ask.slashdot.org/article.pl?sid=05/06/17/1858205  Software for Managing Your Bibliography?]
===Cross platform===
*[http://jabref.sourceforge.net/ JabRef] is an open source bibliography reference manager
===Linux===
*[http://www.bibtex.org/ BibTeX]
*[http://pybliographer.org/ Pybliographer]
*[http://icculus.org/referencer/ Referencer] is a Gnome application to organise documents or references, and ultimately generate a BibTeX bibliography file.
===OS X===
*[http://bibdesk.sourceforge.net/ BibDesk]
*[http://ipapers.sourceforge.net/ iPapers] - PDF manager
*[http://mekentosj.com/papers/ Papers]
==Miscellaneous==
*[http://wwwhomes.uni-bielefeld.de/chase/biotool2web/ Biotool2Web]: Creating Simple Web Interfaces for Bioinformatics Applications
*[http://wwwhomes.uni-bielefeld.de/chase/biotool2web/ Biotool2Web]: Creating Simple Web Interfaces for Bioinformatics Applications
*[http://modis.ispras.ru/sedna/index.htm Sedna] is an open source XML-native database management system developed from scratch in C/C++ and Scheme
*[http://modis.ispras.ru/sedna/index.htm Sedna] is an open source XML-native database management system developed from scratch in C/C++ and Scheme
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**[http://xchm.sourceforge.net/ xchm]
**[http://xchm.sourceforge.net/ xchm]
**[http://chmox.sourceforge.net/ Chmox] - a Mac OS X CHM viewer
**[http://chmox.sourceforge.net/ Chmox] - a Mac OS X CHM viewer
*[http://tor.eff.org/ Tor]: an anonymous Internet communication system
*[http://wireshark.org/ Wireshark]: network protocol analyzer (successor to [http://www.ethereal.com/ Ethereal])
*[http://simile.mit.edu/babel/ Babel] - convert between various formats (Excel, JSON, N3, RDF/XML, etc)
*[http://simile.mit.edu/babel/ Babel] - convert between various formats (Excel, JSON, N3, RDF/XML, etc)
*[http://iris-design.info/photoshop/web-20-style-buttons/ Web 2.0-style buttons]

Latest revision as of 21:45, 8 February 2008

Data visualization

  • Many Eyes - a site for sharing and commenting on visualizations by IBM
  • Data360
  • Swivel: YouTube for data - visualize and share your data with others
  • Gapminder
  • Processing is an open source programming language and environment for people who want to program images, animation, and interactions

Application servers

Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Project management

  • Planner is the GNOME project management tool
  • Eventum - web-based issue tracking system developed by MySQL

Network

  • EtherApe - a graphical network monitor
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Tor: an anonymous Internet communication system

Bibliography

Cross platform

  • JabRef is an open source bibliography reference manager

Linux

OS X

Miscellaneous

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Babel - convert between various formats (Excel, JSON, N3, RDF/XML, etc)
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