User:Ilya/Notes/Software: Difference between revisions
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(New page: *[http://wwwhomes.uni-bielefeld.de/chase/biotool2web/ Biotool2Web]: Creating Simple Web Interfaces for Bioinformatics Applications *[http://modis.ispras.ru/sedna/index.htm Sedna] is an ope...) |
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__NOTOC__ | |||
==Data visualization== | |||
*[http://services.alphaworks.ibm.com/manyeyes/ Many Eyes] - a [http://many-eyes.com/ site] for sharing and commenting on visualizations by IBM | |||
*[http://www.data360.co.uk/ Data360] | |||
*[http://www.swivel.com/ Swivel]: YouTube for data - visualize and share your data with others | |||
*[http://www.gapminder.org/ Gapminder] | |||
*[http://processing.org/ Processing] is an open source programming language and environment for people who want to program images, animation, and interactions | |||
**[http://www.oreilly.com/catalog/9780596514556/index.html Visualizing Data] - O'Reilly book | |||
==Application servers== | |||
[http://www.whitebeam.org/ Whitebeam] - open source; applications are written as a set of XML pages that contain embedded JavaScript | |||
==Project management== | |||
*[http://live.gnome.org/Planner Planner] is the GNOME project management tool | |||
*[http://eventum.mysql.org/ Eventum] - web-based issue tracking system developed by MySQL | |||
==Network== | |||
*[http://etherape.sourceforge.net/ EtherApe] - a graphical network monitor | |||
*[http://wireshark.org/ Wireshark]: network protocol analyzer (successor to [http://www.ethereal.com/ Ethereal]) | |||
*[http://tor.eff.org/ Tor]: an anonymous Internet communication system | |||
==Bibliography== | |||
*[http://ask.slashdot.org/article.pl?sid=05/06/17/1858205 Software for Managing Your Bibliography?] | |||
===Cross platform=== | |||
*[http://jabref.sourceforge.net/ JabRef] is an open source bibliography reference manager | |||
===Linux=== | |||
*[http://www.bibtex.org/ BibTeX] | |||
*[http://pybliographer.org/ Pybliographer] | |||
*[http://icculus.org/referencer/ Referencer] is a Gnome application to organise documents or references, and ultimately generate a BibTeX bibliography file. | |||
===OS X=== | |||
*[http://bibdesk.sourceforge.net/ BibDesk] | |||
*[http://ipapers.sourceforge.net/ iPapers] - PDF manager | |||
*[http://mekentosj.com/papers/ Papers] | |||
==Miscellaneous== | |||
*[http://wwwhomes.uni-bielefeld.de/chase/biotool2web/ Biotool2Web]: Creating Simple Web Interfaces for Bioinformatics Applications | *[http://wwwhomes.uni-bielefeld.de/chase/biotool2web/ Biotool2Web]: Creating Simple Web Interfaces for Bioinformatics Applications | ||
*[http://modis.ispras.ru/sedna/index.htm Sedna] is an open source XML-native database management system developed from scratch in C/C++ and Scheme | *[http://modis.ispras.ru/sedna/index.htm Sedna] is an open source XML-native database management system developed from scratch in C/C++ and Scheme | ||
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**[http://xchm.sourceforge.net/ xchm] | **[http://xchm.sourceforge.net/ xchm] | ||
**[http://chmox.sourceforge.net/ Chmox] - a Mac OS X CHM viewer | **[http://chmox.sourceforge.net/ Chmox] - a Mac OS X CHM viewer | ||
*[http://simile.mit.edu/babel/ Babel] - convert between various formats (Excel, JSON, N3, RDF/XML, etc) | *[http://simile.mit.edu/babel/ Babel] - convert between various formats (Excel, JSON, N3, RDF/XML, etc) | ||
Latest revision as of 21:45, 8 February 2008
Data visualization
- Many Eyes - a site for sharing and commenting on visualizations by IBM
- Data360
- Swivel: YouTube for data - visualize and share your data with others
- Gapminder
- Processing is an open source programming language and environment for people who want to program images, animation, and interactions
- Visualizing Data - O'Reilly book
Application servers
Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript
Project management
- Planner is the GNOME project management tool
- Eventum - web-based issue tracking system developed by MySQL
Network
- EtherApe - a graphical network monitor
- Wireshark: network protocol analyzer (successor to Ethereal)
- Tor: an anonymous Internet communication system
Bibliography
Cross platform
- JabRef is an open source bibliography reference manager
Linux
- BibTeX
- Pybliographer
- Referencer is a Gnome application to organise documents or references, and ultimately generate a BibTeX bibliography file.
OS X
Miscellaneous
- Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
- Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
- Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
- CHM file viewers for non-Windows platforms
- Babel - convert between various formats (Excel, JSON, N3, RDF/XML, etc)