User:Jarle Pahr: Difference between revisions
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===Software tools=== | ===Software tools=== | ||
====Bioinformatics & Annotation==== | |||
Neural Network Promoter Prediction: http://www.fruitfly.org/seq_tools/promoter.html | |||
Artemis genome browser: http://www.sanger.ac.uk/resources/software/artemis/ | Artemis genome browser: http://www.sanger.ac.uk/resources/software/artemis/ | ||
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Promethease: http://snpedia.com/index.php/Promethease | Promethease: http://snpedia.com/index.php/Promethease | ||
GLIMMER microbial gene-finding system: http://www.cbcb.umd.edu/software/glimmer/ | |||
Promoter & termination site search tools: http://molbiol-tools.ca/Promoters.htm | |||
====Cloning & Construction==== | |||
The Constructor: http://2011.igem.org/Team:Wageningen_UR/Softwaretool/ | The Constructor: http://2011.igem.org/Team:Wageningen_UR/Softwaretool/ | ||
NEBcutter: http://tools.neb.com/NEBcutter2/ | NEBcutter: http://tools.neb.com/NEBcutter2/ | ||
J5 automated DNA assembly: http://j5.jbei.org/index.php/Main_Page | J5 automated DNA assembly: http://j5.jbei.org/index.php/Main_Page | ||
Genome Compiler: http://www.genomecompiler.com/ | |||
Gibthon: http://django.gibthon.org/ | |||
====Misc. ==== | |||
Misc. molecular biology freeware: http://molbiol-tools.ca/molecular_biology_freeware.htm | |||
J Craig Venter Institute - software: http://www.jcvi.org/cms/research/software/ | J Craig Venter Institute - software: http://www.jcvi.org/cms/research/software/ | ||
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The Oligator: http://gcat.davidson.edu/igem10/tutorial.html | The Oligator: http://gcat.davidson.edu/igem10/tutorial.html | ||
Nuclei Acid sequence massager: http://www.attotron.com/cybertory/analysis/seqMassager.htm | Nuclei Acid sequence massager: http://www.attotron.com/cybertory/analysis/seqMassager.htm | ||
String functional protein interaction networks: http://string-db.org/newstring_cgi/show_input_page.pl?UserId=y_1_rGDH3F2_&sessionId=JqYi1VB4HXQn | |||
See also: http://2012.igem.org/User_talk:Jarlemag and http://2012.igem.org/Team:NTNU_Trondheim/Links | See also: http://2012.igem.org/User_talk:Jarlemag and http://2012.igem.org/Team:NTNU_Trondheim/Links | ||
Revision as of 06:01, 17 October 2012
Contact Info
- Jarle Pahr
- Norwegian University of Science and Technology
jarlemag@stud.ntnu.no
Education
2007-2013: Msc., Chemical engineering & Biotechnology, Norwegian University of Science & Technology
Research interests
- Omega-3/poly-unsaturated fatty acid biosynthesis
- Metabolic engineering for biofuels production
- Biological parts standardization, open- & low-cost molecular biology
Useful links
Databases/Repositories
PlasmID database: http://plasmid.med.harvard.edu/PLASMID/
Addgene plasmid repository: http://www.addgene.org/
Software tools
Bioinformatics & Annotation
Neural Network Promoter Prediction: http://www.fruitfly.org/seq_tools/promoter.html
Artemis genome browser: http://www.sanger.ac.uk/resources/software/artemis/
BASYS Bacterial Annotation software: http://basys.ca/
SoftBerry: http://linux1.softberry.com/berry.phtml
Promethease: http://snpedia.com/index.php/Promethease
GLIMMER microbial gene-finding system: http://www.cbcb.umd.edu/software/glimmer/
Promoter & termination site search tools: http://molbiol-tools.ca/Promoters.htm
Cloning & Construction
The Constructor: http://2011.igem.org/Team:Wageningen_UR/Softwaretool/
NEBcutter: http://tools.neb.com/NEBcutter2/
J5 automated DNA assembly: http://j5.jbei.org/index.php/Main_Page
Genome Compiler: http://www.genomecompiler.com/
Gibthon: http://django.gibthon.org/
Misc.
Misc. molecular biology freeware: http://molbiol-tools.ca/molecular_biology_freeware.htm
J Craig Venter Institute - software: http://www.jcvi.org/cms/research/software/
DNA sequence transformation tools: http://molbiol-tools.ca/Convert.htm
The Oligator: http://gcat.davidson.edu/igem10/tutorial.html
Nuclei Acid sequence massager: http://www.attotron.com/cybertory/analysis/seqMassager.htm
String functional protein interaction networks: http://string-db.org/newstring_cgi/show_input_page.pl?UserId=y_1_rGDH3F2_&sessionId=JqYi1VB4HXQn
See also: http://2012.igem.org/User_talk:Jarlemag and http://2012.igem.org/Team:NTNU_Trondheim/Links
