User:Jarle Pahr/Articles: Difference between revisions
Jarle Pahr (talk | contribs) No edit summary |
Jarle Pahr (talk | contribs) No edit summary |
||
Line 105: | Line 105: | ||
Programming biological models in Python using PySB: http://www.nature.com/msb/journal/v9/n1/full/msb20131.html | Programming biological models in Python using PySB: http://www.nature.com/msb/journal/v9/n1/full/msb20131.html | ||
Modeling the effect of cell division on genetic oscillators: http://www.sciencedirect.com/science/article/pii/S0022519313000593 | |||
==March== | ==March== |
Revision as of 18:10, 13 March 2013
Reviews
Collections
http://www.ploscollections.org/article/browse/issue/info%3Adoi%2F10.1371%2Fissue.pcol.v02.i18
Microbial Cell Factories - Systems biotechnology and metabolic engineering: http://www.microbialcellfactories.com/series/Systemsbiotech
Nutrition
Pshycology
Negativland - a home for all findings in psychology: http://www.biomedcentral.com/2050-7283/1/2
By year
Enzymes used in molecular biology: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570007/
1985
T4 DNA Polymerase Exonuclease: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC341235/pdf/nar00303-0272.pdf
1998
Purification of DNA from soil: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC140122/
2009
Design Parameters to Control Synthetic Gene Expression in Escherichia coli: http://www.plosone.org/article/info%3adoi/10.1371/journal.pone.0007002
2010
Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome: http://www.sciencemag.org/content/329/5987/52.abstract
2011
Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement
2012
A novel PCR-based method for high throughput prokaryotic expression of antimicrobial peptide genes http://www.biomedcentral.com/1472-6750/12/10
http://onlinelibrary.wiley.com/doi/10.1002/biot.201200002/abstract
A Whole-Cell Computational Model Predicts Phenotype from Genotype: http://www.cell.com/abstract/S0092-8674%2812%2900776-3
Estimation and Discrimination of Stochastic Biochemical Circuits from Time-Lapse Microscopy Data: http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047151;jsessionid=E644941045A1954B020570C9A0135584
Bottom-Up Engineering of Biological Systems through Standard Bricks: A Modularity Study on Basic Parts and Devices: http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0039407;jsessionid=E644941045A1954B020570C9A0135584
September
TREX: A Universal Tool for the Transfer and Expression of Biosynthetic Pathways in Bacteria - http://pubs.acs.org/doi/abs/10.1021/sb3000657
2013
January
Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology : http://nar.oxfordjournals.org/content/early/2013/01/31/nar.gkt052.full
Nutrient timing revisited: is there a post-exercise anabolic window? http://www.jissn.com/content/10/1/5
Genome-scale engineering for systems and synthetic biology: http://www.nature.com/msb/journal/v9/n1/full/msb201266.html
High-throughput sequencing for biology and medicine: http://www.nature.com/msb/journal/v9/n1/full/msb201261.html
Cultivation conditions and the diffusion of oxygen into culture media: The rationale for the flask-to-medium ratio in microbiology: http://www.biomedcentral.com/1471-2180/13/9
Redirector: Designing Cell Factories by Reconstructing the Metabolic Objective: http://www.ncbi.nlm.nih.gov/pubmed/23341769
http://www.tandfonline.com/doi/pdf/10.1080/19378629.2013.764881
http://www.tandfonline.com/doi/abs/10.1080/19378629.2013.763811
http://www.tandfonline.com/doi/abs/10.1080/19378629.2012.762651
Identifying Personal Genomes by Surname Inference - http://www.sciencemag.org/content/339/6117/321.abstract
February
Multiplex Genome Engineering Using CRISPR/Cas Systems. ("Genetic surgery"): http://www.sciencemag.org/content/339/6121/819.full
Synthetic circuits integrating logic and memory in living cells: http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2510.html
The Bacterial Nanorecorder: Engineering E. coli to Function as a Chemical Recording Device: http://www.ncbi.nlm.nih.gov/pubmed/22132112
Growth-rate-dependent dynamics of a bacterial genetic oscillator: http://pre.aps.org/abstract/PRE/v87/i1/e012726
Understanding and Exploiting Feedback in Synthetic Biology: http://www.sciencedirect.com/science/article/pii/S0009250913001097
Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli: http://www.nature.com/msb/journal/v9/n1/full/msb201276.html
Artificial repressors for controlling gene expression in bacteria: http://pubs.rsc.org/en/content/articlepdf/2013/cc/c2cc37107c
Programming biological models in Python using PySB: http://www.nature.com/msb/journal/v9/n1/full/msb20131.html
Modeling the effect of cell division on genetic oscillators: http://www.sciencedirect.com/science/article/pii/S0022519313000593
March
Quantitative estimation of activity and quality for collections of functional genetic elements: http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.2403.html
Precise and reliable gene expression via standard transcription and translation initiation elements: http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.2404.html