User:Jarle Pahr/FBA: Difference between revisions
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GF-FBA: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3572438/ | GF-FBA: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3572438/ | ||
Development of thermodynamic optimum searching (TOS) to improve the prediction accuracy of flux balance analysis | |||
=Bibliography= | =Bibliography= |
Revision as of 04:01, 12 August 2013
Notes on Flux Balance Analysis and related methods:
http://systemsbiology.ucsd.edu/Downloads/FluxBalanceAnalysis
Research groups/persons
Reed lab: http://reedlab.che.wisc.edu/Downloads/downloads.html
Palsson lab: http://gcrg.ucsd.edu/Researchers/Palsson
http://covertlab.stanford.edu/projects/ScienceGenealogy/viewScientist.php?ScientistID=21319
Jeffrey Orth: http://gcrg.ucsd.edu/Researchers/Orth
Thiele lab: http://thielelab.eu/
Tomer Schlomi: http://www.cs.technion.ac.il/~tomersh/
Costas D Maranas: http://maranas.che.psu.edu/index.htm
Adam Feist: http://systemsbiology.ucsd.edu/Researchers/Feist
Anthony Burgard: http://www.biomedexperts.com/Profile.bme/172456/Anthony_P_Burgard
Markus Covert: http://bioengineering.stanford.edu/faculty/covert.html
Jeremy S Edwards: https://sites.google.com/site/edwardsunmlab/people/edwards
David Fell: http://scholar.google.com/citations?user=KiFdFGQAAAAJ&hl=en
Nicola Zamboni: http://www.imsb.ethz.ch/researchgroup/nzamboni
Uwe Sauer: http://www.imsb.ethz.ch/researchgroup/sauer
Lars Kuepfer: http://www.frontiersin.org/people/26593/larskuepfer/publications
Nathan D Price: http://price.systemsbiology.net/
Markus J Herrgård: http://covertlab.stanford.edu/projects/ScienceGenealogy/viewScientist.php?ScientistID=19957
Prof. Matthias Heinemann: http://www.rug.nl/research/molecular-systems-biology/
Prof. Jens Nielsen: http://www.sysbio.se/
Nathan E Lewis: http://sbcg.wikidot.com/n
Jason Papin: http://bme.virginia.edu/people/papin.html
Jan Schellenberger: http://scholar.google.no/citations?user=h00uG8UAAAAJ&hl=no
Stephan Shuster: http://scholar.google.no/citations?user=HMtRbrkAAAAJ&hl=no
Jorg Stelling: http://www.csb.ethz.ch/people/joergs
Extensions/Related methods
GF-FBA: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3572438/
Development of thermodynamic optimum searching (TOS) to improve the prediction accuracy of flux balance analysis
Bibliography
Integration of expression data in genome-scale metabolic network reconstructions: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3429070/
RELATCH: http://genomebiology.com/2012/13/9/R78/
The geometry of the Pareto front in biological phenotype space H Sheftel, O Shoval, A Mayo, U Alon Ecology and Evolution
MultiMetEval: Comparative and Multi-Objective Analysis of Genome-Scale Metabolic Models: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051511
A method for accounting for maintenance costs: http://onlinelibrary.wiley.com/doi/10.1111/tpj.12252/abstract
http://www.biomedcentral.com/bmcbioinformatics/
Books:
http://gcrg.ucsd.edu/Publications/Books
Software
GAMS: http://www.gams.com/
OpenCOBRA: