User:Jarle Pahr/Metabolic modelling: Difference between revisions
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Lerman JA*, Hyduke DR*, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO. 2012 In silico method for modelling metabolism and gene product expression at genome scale. Nature Communications 3:929. http://www.nature.com/ncomms/journal/v3/n7/full/ncomms1928.html | Lerman JA*, Hyduke DR*, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO. 2012 In silico method for modelling metabolism and gene product expression at genome scale. Nature Communications 3:929. http://www.nature.com/ncomms/journal/v3/n7/full/ncomms1928.html | ||
Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Molecular Systems Biology 9 Article number: 661 doi:10.1038/msb.2013.18 Published online: 30 April 2013. : http://www.nature.com/msb/journal/v9/n1/full/msb201318.html | |||
Revision as of 14:38, 9 August 2013
Software:
RAVEN: http://129.16.106.142/tools.php?c=raven
http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002980
BioMet Toolbox: http://129.16.106.142/
ScrumPy: http://mudshark.brookes.ac.uk/ScrumPy
Bibliography:
Lerman JA*, Hyduke DR*, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO. 2012 In silico method for modelling metabolism and gene product expression at genome scale. Nature Communications 3:929. http://www.nature.com/ncomms/journal/v3/n7/full/ncomms1928.html
Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Molecular Systems Biology 9 Article number: 661 doi:10.1038/msb.2013.18 Published online: 30 April 2013. : http://www.nature.com/msb/journal/v9/n1/full/msb201318.html
