User:Jarle Pahr/Projects: Difference between revisions
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*Genome-scale metabolic model for Rhodococcus opacus PD630 | *Genome-scale metabolic model for Rhodococcus opacus PD630 | ||
*Genotype yeast strains. Use available information on metabolite production to search for mutated genes. Perhaps using a genome-scale metabolic model? | *Genotype yeast strains. Use available information on metabolite production to search for mutated genes. Perhaps using a genome-scale metabolic model? | ||
*Curate/improve genome-scale metabolic model for M. florum. | |||
*Analysis of coupled feedback loops. Go back to that Ferrel article. | *Analysis of coupled feedback loops. Go back to that Ferrel article. | ||
*Modelling of evolution in metabolic models. Ask for some references? | *Modelling of evolution in metabolic models. Ask for some references? | ||
*Draw article citation networks on some interesting topics (nested feedback loops, lactate dehydrogenase, stringent response...) | |||
*16S rDNA analysis. What kind of samples? | |||
*Go through NGS tutorials. | |||
*Contribute to CobraPy? | |||
*Work on ROSALIND problems. | |||
*Work on metabolic model analysis programs. Port to Python. | |||
More far out: | |||
*Sequence a mesoplasma species? | |||
http://www.imsb.ethz.ch/researchgroup/sauer/Students |
Latest revision as of 11:15, 13 July 2013
Suggestions for projects to keep busy and develop skills:
- Genome-scale metabolic model for Rhodococcus opacus PD630
- Genotype yeast strains. Use available information on metabolite production to search for mutated genes. Perhaps using a genome-scale metabolic model?
- Curate/improve genome-scale metabolic model for M. florum.
- Analysis of coupled feedback loops. Go back to that Ferrel article.
- Modelling of evolution in metabolic models. Ask for some references?
- Draw article citation networks on some interesting topics (nested feedback loops, lactate dehydrogenase, stringent response...)
- 16S rDNA analysis. What kind of samples?
- Go through NGS tutorials.
- Contribute to CobraPy?
- Work on ROSALIND problems.
- Work on metabolic model analysis programs. Port to Python.
More far out:
- Sequence a mesoplasma species?