User:Jessica A. Bryant: Difference between revisions

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Bryant, JA, Stewart, FJ., Epply, JM., DeLong, EF.  Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. 2012. Ecology 93(7):1659-73 [http://www.esajournals.org/doi/abs/10.1890/11-1204.1]  
Bryant, JA, Stewart, FJ., Epply, JM., DeLong, EF.  Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. 2012. Ecology 93(7):1659-73 [http://www.esajournals.org/doi/abs/10.1890/11-1204.1]  


Stewart, FJ., Sharma, AK., Bryant, JA., Eppley, JM., Delong, EF. Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. 2011. Genome Biology 12:R26 [http://genomebiology.com/content/12/3/R26]
Stewart, FJ., Sharma, AK., Bryant, JA., Eppley, JM., Delong, EF. Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. 2011. Genome Biology 12:R26 [http://genomebiology.com/content/12/3/R26]

Revision as of 20:36, 3 November 2012

Contact Info

Jessica A. Bryant
Jessica A. Bryant
  • Jessica A. Bryant
  • Delong Lab
  • Massachusetts Institute of Technology
  • 48-428
  • Cambridge, MA 02139
  • JessAwBryant@gmail.com

Education

  • 2008, MS, University of Oregon; Advisor: Jessica Green
  • 2005, BS, University of California Santa Cruz

Research Interests

  1. Microbial Ecology
  2. Metagenomics
  3. Biodiversity

Outreach

Sierra Club: legislative action

The Sierra Club is the nation's oldest and most effective grassroots environmental organization. Here in Massachusetts, the local chapter has a 40-year legacy of protecting the environment with successful legislative, advocacy, and educational campaigns.

Links

phylosor is available on R!

Center for Ecology and Evolutionary Biology at U of O

Publications

Bryant, JA, Stewart, FJ., Epply, JM., DeLong, EF. Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. 2012. Ecology 93(7):1659-73 [1]


Stewart, FJ., Sharma, AK., Bryant, JA., Eppley, JM., Delong, EF. Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. 2011. Genome Biology 12:R26 [2]


Morlon, H., Schwilk, D., Bryant, JA., Marquet, P., Rebelo, T., Tauss, C., Bohannan, B. and Green, J. Spatial patterns of phylogenetic diversity. 2011. Ecology Letters 14: 141-149 [3]


Bryant, JA., Lamanna, C., Morlon, H., Kerkhoff, A.J., Enquist, B.J., Green, J.L. Microbes on mountainsides: Contrasting elevational patterns of bacteria and plant diversity. 2008. PNAS 105: 11453-11457 [4]


Srinivasan K. Shiue L, Hayws JD, Centers R, Fitzwater S, Loewen R, Edmondson LR, Bryant J, Smith M, Rommelfanger C, Welch V, Clark TA, Sugnet CW, Howe KJ, Madel-Gutfreund Y and Ares M Jr. 2005. Detection and measurement of alternative splicing using splicing-sensitive microarrays. Methods 37: 345-359 [5]

Misc. R Scripts

Click on the links below to download any scripts, but be aware that they come with no guarantees. Better descriptions of the function’s and code commenting will be coming soon.

File:PDrarefy.r

File:MPDrarefy.r

File:FRrarefy resample.r