User:Jonathan Cline/Notebook/Melaminometer/Structural Models

Structural Models for Specific Proteins

Some related data available.

Pfam & InterPro

• melamine deaminase
  • Family: Amidohydro_1 (PF01979) http://pfam.sanger.ac.uk/family?acc=PF01979
    • http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006680
• ammelide aminohydrolase
  • Family: Amidohydro_3 (PF07969) http://pfam.sanger.ac.uk/family?acc=PF07969
• cyanuric acid amidohydrolase
  • Family: Amido_AtzD_TrzD (PF09663) http://pfam.sanger.ac.uk/family?acc=PF09663
• biuret hydrolase
  • Family: Amidase (PF01425) http://pfam.sanger.ac.uk/family?acc=PF01425
  • InterPro: IPR000120 Amidase signature enzyme http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000120
• allophanate hydrolase
  • not found

Search by TriA sequence	Search by Melamine structure
42 ligand hits were found by TriA sequence search in PDB. The ligands similar to melamine structure are:	one protein hit (3BMM) were found by EXACT melamine structure search in PDB There are 4 identical protein chains (A, B, C and D) in this structure 3D snapshot of 3BMM structure in jmol TriA and chains in 3BMM are locally similar in sequence (TriA vs. Chain C in 3BMM)