User:Jose Fabricio Lopez/Notebook/GEDF/2012/08/21: Difference between revisions

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==Trichoderma & A. thaliana interaction==
==Trichoderma & A. thaliana interaction==
====Things to do====
====Things to do====
 
*Check plants
*Change from cold room A.thal. Columbus [[User:Jose Fabricio Lopez/Notebook/GEDF/2012/08/16#Things_done|sincronized]] in 4°C room to long day chamber
====Things done====
====Things done====
 
*Checked.
*Changed
===Loogbook===
===Loogbook===
 
*They are growin well, some are sick. One not inoculed and far from inoculated, have started to show chlorosis.
*I changed just two dishes, I will put germinated plants in soil in two days.
==Intergenic sequences in T.atroviride==
==Intergenic sequences in T.atroviride==
====Things to do====
====Things to do====
 
*Check BLASTX results
====Things done====
====Things done====
 
*Checked.
===Loogbook===
===Loogbook===
*Need to run again BLASTX with Martha's help. I mistaken de ID of queries. Some preliminary results show that in just IntergenicFasta.fna are ~500 possible candidates to be CDS. Next step use Augustus.


 
==Extras==
*Compare list of TotalCoords & WCLDirtyCoords of Intergenic to sRNA of Nohemí.
**TotalsRNA Vs WCLDirtyCoords
**SelectedsRNA Vs WCLTotalDirtyCoords
**Total Vs TotalCoords
**Selected Vs TotalCoords
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Latest revision as of 17:54, 21 August 2012

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Trichoderma & A. thaliana interaction

Things to do

  • Check plants
  • Change from cold room A.thal. Columbus sincronized in 4°C room to long day chamber

Things done

  • Checked.
  • Changed

Loogbook

  • They are growin well, some are sick. One not inoculed and far from inoculated, have started to show chlorosis.
  • I changed just two dishes, I will put germinated plants in soil in two days.

Intergenic sequences in T.atroviride

Things to do

  • Check BLASTX results

Things done

  • Checked.

Loogbook

  • Need to run again BLASTX with Martha's help. I mistaken de ID of queries. Some preliminary results show that in just IntergenicFasta.fna are ~500 possible candidates to be CDS. Next step use Augustus.

Extras

  • Compare list of TotalCoords & WCLDirtyCoords of Intergenic to sRNA of Nohemí.
    • TotalsRNA Vs WCLDirtyCoords
    • SelectedsRNA Vs WCLTotalDirtyCoords
    • Total Vs TotalCoords
    • Selected Vs TotalCoords
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