User:Jose Fabricio Lopez/Notebook/GEDF/2012/08/27: Difference between revisions
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==Trichoderma & A. thaliana interaction== | ==Trichoderma & A. thaliana interaction== | ||
====Things to do==== | ====Things to do==== | ||
*Check plants | |||
*Move to soil plants | |||
====Things done==== | ====Things done==== | ||
*Plants were checked | |||
*Unfortunatly our seeds were polluted. And Emmy and me are no having succesful number of growth seeds. | |||
===Loogbook=== | ===Loogbook=== | ||
*Nothing to say | |||
==Intergenic sequences in T.atroviride== | ==Intergenic sequences in T.atroviride== | ||
====Things to do==== | ====Things to do==== | ||
*Extract whole intergenic sequences of Trichoderma atroviride. | |||
====Things done==== | ====Things done==== | ||
*Half on the way. | |||
===Loogbook=== | ===Loogbook=== | ||
*Unfortunately genomme is not well annotated, I mean, the file .gff in [http://genome.jgi-psf.org/Triat2/Triat2.download.ftp.html JGI], have somo problems. Some IDs are part of the all models. This gives me problems. | |||
*To avoid problems I used IRanges, in order to "reduce()" the coords of Conding Zones and leaving Intergenic By Strand apart. | |||
*GettingWholeIntergenicSequences.R file. | |||
==Extras== | ==Extras== | ||
*There are no extras | |||
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Latest revision as of 17:47, 27 August 2012
Gene Expression and Development in Fungi | <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Trichoderma & A. thaliana interactionThings to do
Things done
Loogbook
Intergenic sequences in T.atrovirideThings to do
Things done
Loogbook
Extras
|