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 Gene Expression and Development in Fungi
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Trichoderma & A. thaliana interaction
Things to do
- Check plants
- Move to soil plants
Things done
- Plants were checked
- Unfortunatly our seeds were polluted. And Emmy and me are no having succesful number of growth seeds.
Loogbook
Intergenic sequences in T.atroviride
Things to do
- Extract whole intergenic sequences of Trichoderma atroviride.
Things done
Loogbook
- Unfortunately genomme is not well annotated, I mean, the file .gff in JGI, have somo problems. Some IDs are part of the all models. This gives me problems.
- To avoid problems I used IRanges, in order to "reduce()" the coords of Conding Zones and leaving Intergenic By Strand apart.
- GettingWholeIntergenicSequences.R file.
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Gene Expression and Development in Fungi
