User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/06: Difference between revisions

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(Autocreate 2012/09/06 Entry for User:Jose_Fabricio_Lopez/Notebook/GEDF)
 
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==Trichoderma & P. vulgaris interaction==
==Trichoderma & P. vulgaris interaction==
====Things to do====
====Things to do====
 
*Water plants
*Talk with Eli.
====Things done====
====Things done====


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==Intergenic sequences in T.atroviride==
==Intergenic sequences in T.atroviride==
====Things to do====
====Things to do====
 
*Check [[User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/05#Intergenic_sequences_in_T.atroviride | BLAST test]]
====Things done====
====Things done====
 
*Checking.
===Loogbook===
===Loogbook===
*Augustus reported g14543 prots.
*BLAST gave *****No hits found***** = g14543, hence 13537 with hit.
*I am running it again. with this line
<code>
/data/storage/software/ncbi-blast-2.2.26+/bin/blastp -db /home/miguelh/FIBLO/BLASTTricho/DataBases/TrichodermaAtrovirideV2.aa -evalue 1e-5 -num_alignments 1 -query /home/miguelh/FIBLO/BLASTTricho/Jobs/augustusPredictionTestResults.aa -out /home/miguelh/FIBLO/BLASTTricho/Jobs/BLASTTestAugustusVsTrichodremaFrozenGene.txt -word_size 7 -outfmt 6</code>


==Extras==
==Extras==


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Revision as of 11:53, 6 September 2012

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Trichoderma & P. vulgaris interaction

Things to do

  • Water plants
  • Talk with Eli.

Things done

Loogbook

Intergenic sequences in T.atroviride

Things to do

Things done

  • Checking.

Loogbook

  • Augustus reported g14543 prots.
  • BLAST gave *****No hits found***** = g14543, hence 13537 with hit.
  • I am running it again. with this line

/data/storage/software/ncbi-blast-2.2.26+/bin/blastp -db /home/miguelh/FIBLO/BLASTTricho/DataBases/TrichodermaAtrovirideV2.aa -evalue 1e-5 -num_alignments 1 -query /home/miguelh/FIBLO/BLASTTricho/Jobs/augustusPredictionTestResults.aa -out /home/miguelh/FIBLO/BLASTTricho/Jobs/BLASTTestAugustusVsTrichodremaFrozenGene.txt -word_size 7 -outfmt 6

Extras
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