User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/06: Difference between revisions

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===Loogbook===
===Loogbook===


==Intergenic sequences in T.atroviride==
 
====Things to do====
*Check [[User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/05#Intergenic_sequences_in_T.atroviride | BLAST test]]
====Things done====
*Checking.
===Loogbook===
*Augustus reported g14543 prots.
*BLAST gave *****No hits found***** = g14543, hence 13537 with hit.
*I am running it again. with this line
<code>
/data/storage/software/ncbi-blast-2.2.26+/bin/blastp -db /home/miguelh/FIBLO/BLASTTricho/DataBases/TrichodermaAtrovirideV2.aa -evalue 1e-5 -num_alignments 1 -query /home/miguelh/FIBLO/BLASTTricho/Jobs/augustusPredictionTestResults.aa -out /home/miguelh/FIBLO/BLASTTricho/Jobs/BLASTTestAugustusVsTrichodremaFrozenGene.txt -word_size 7 -outfmt 6</code>


==Extras==
==Extras==


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Revision as of 12:27, 6 September 2012

Gene Expression and Development in Fungi <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page
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Trichoderma & P. vulgaris interaction

Things to do

  • Water plants
  • Talk with Eli.

Things done

Loogbook

Extras
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