User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/06

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Trichoderma & P. vulgaris interaction

Things to do

  • Water plants
  • Talk with Eli.

Things done

Loogbook

Intergenic sequences in T.atroviride

Things to do

Things done

  • Checking.

Loogbook

  • Augustus reported g14543 prots.
  • BLAST gave *****No hits found***** = g14543, hence 13537 with hit.
  • I am running it again. with this line

/data/storage/software/ncbi-blast-2.2.26+/bin/blastp -db /home/miguelh/FIBLO/BLASTTricho/DataBases/TrichodermaAtrovirideV2.aa -evalue 1e-5 -num_alignments 1 -query /home/miguelh/FIBLO/BLASTTricho/Jobs/augustusPredictionTestResults.aa -out /home/miguelh/FIBLO/BLASTTricho/Jobs/BLASTTestAugustusVsTrichodremaFrozenGene.txt -word_size 7 -outfmt 6

Extras
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