User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/19: Difference between revisions

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===Loogbook===
===Loogbook===
====Genome====
====Genome====
'''Prediction'''
'''Submitting'''
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Wed Sep 19 21:21:32 CEST 2012 - Message:
Wed Sep 19 21:21:32 CEST 2012 - Message:
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====BOTH====
====BOTH====
 
'''Submitting'''
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Wed Sep 19 21:27:43 CEST 2012 - Message:
Wed Sep 19 21:27:43 CEST 2012 - Message:

Revision as of 12:16, 19 September 2012

Gene Expression and Development in Fungi <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Trichoderma & P. vulgaris interaction

Things to do

  • Inoculate Beans new beans stock with T. atro.

Things done

Loogbook

Intergenic sequences in T.atroviride

Things to do

  • Augustus prediction with training
    • BOTH.
    • Genome.
    • 0bp away.

Things done

  • Prediction Genome

Loogbook

Genome

Submitting


Wed Sep 19 21:21:32 CEST 2012 - Message:


Details of your job:

Prediction job ID: predN*******

Parameter archive: parameters.tar.gz

Genome file: Trichoderma_atroviride_v2.fasta

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false

BOTH

Submitting


Wed Sep 19 21:27:43 CEST 2012 - Message:


Details of your job:

Prediction job ID: pred******

Parameter archive: parameters.tar.gz

Genome file: ****BOTH.fas

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false

Extras