User:Kam D. Dahlquist: Difference between revisions

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[http://www.lmu.edu LMU home page]
==Contact Info==
==Contact Info==


  Kam D. Dahlquist, Ph.D.
  Kam D. Dahlquist, Ph.D.
  Associate Professor
  Professor
  Department of Biology
  Department of Biology
  Loyola Marymount University
  Loyola Marymount University
  1 LMU Drive, MS8220
  1 LMU Drive, MS8888
  Los Angeles, CA 90045  
  Los Angeles, CA 90045  
*[[Special:Emailuser/Kam D. Dahlquist|Email me through OpenWetWare]]
*[[Special:Emailuser/Kam D. Dahlquist|Email me through OpenWetWare]]
*[[Dahlquist | Dahlquist Lab OpenWetware site]]
*[[Dahlquist | Dahlquist Lab OpenWetware site]]
*[[BIOL398-01/S10 | BIOL 398-01 Bioinformatics Laboratory OpenWetware site]]
I am the head of the [http://myweb.lmu.edu/kdahlqui Dahlquist Lab] at [http://www.lmu.edu Loyola Marymount University].  I learned about [[OpenWetWare]] through a Google search when I was searching for a protocol online. I've joined because I run a lab with undergraduates at a primarily undergraduate institution and would like to post my protocols and supply lists online for easy access and to share them with the community.


=== Office Hours Spring 2011 ===
I am the head of the [http://kdahlquist.github.io/DahlquistLab/index.htm Dahlquist Lab] at [http://www.lmu.edu Loyola Marymount University].  I learned about [[OpenWetWare]] through a Google search when I was searching for a protocol online. I've joined because I run a lab with undergraduates at a primarily undergraduate institution and would like to post my protocols and supply lists online for easy access and to share them with the community.  I also host some of my courses on this site (see below).


MW 1:00 PM - 3:00 PM
== Courses Taught ==


Office: Seaver 218
* See complete list on [http://kdahlquist.github.io/DahlquistLab/courses.htm this page].
* Links to OpenWetWare sites:
** Bioinformatics Laboratory
*** [[BIOL368/S20 | Biology 368:  Bioinformatics Laboratory Spring 2020]]
*** [[BIOL368/F16 | Biology 368:  Bioinformatics Laboratory Fall 2016]]
*** [[BIOL368/F14 | Biology 368:  Bioinformatics Laboratory Fall 2014]]
*** [[BIOL368/F11 | Biology 368:  Bioinformatics Laboratory Fall 2011]]
*** [[BIOL398-01/S10 | Biology 398-01: Bioinformatics Laboratory Spring 2010]]
** Biomathematical Modeling
*** [[BIOL388/S19 | Biology 388-01:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2019]]
*** [[BIOL398-05/S17 | Biology 398-05:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2017]]
*** [[BIOL398-04/S15 | Biology 398-04:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2015]]
*** [[BIOL398-03/S13 | Biology 398-03:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2013]]
*** [[BIOL398-01/S11 | Biology 398-01:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2011]]
** Biological Databases
*** [[BIOL367/F10 | Biology / Computer Science 367-01/ Honors 398-05: Biological Databases Fall 2010 partial site on this wiki]]


==Education==
==Education==
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==Research interests==
==Research interests==


# [http://xmlpipedb.cs.lmu.edu XMLPipeDB]:  A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the [http://www.GenMAPP.org GenMAPP] software
# [http://xmlpipedb.cs.lmu.edu XMLPipeDB]:  A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; [[Dahlquist:MAPP Archive|creating MAPPs]] and [[Dahlquist:Gene Databases|Gene Databases]] for the [http://www.GenMAPP.org GenMAPP Classic] software
# The Global Transcriptional Response of ''Saccharomyces cerevisiae'' to Cold Shock and Recovery
# The Global Transcriptional Response of ''Saccharomyces cerevisiae'' to [[Dahlquist:Yeast Cold Shock|Cold Shock]] and Recovery
# Mathematical Modeling of the Transcriptional Network Controlling the Environmental Stress Response in ''Saccharomyces cerevisiae''
# [[Dahlquist:Mathematical Modeling|Mathematical Modeling]] of the [[Dahlquist:Yeast Transcription Factors|Transcriptional Network]] Controlling the Environmental Stress Response in ''Saccharomyces cerevisiae'' using the [http://kdahlquist.github.io/GRNmap/ GRNmap software]
# Identifying Soil Bacteria and Biochemical Pathways in the Ballona Wetlands for the Bioremediation of Organic Pollutants
# [http://dondi.github.io/GRNsight/index.html GRNsight]:  A Web Application for Visualizing Models of Gene Regulatory Networks


==Publications==
==Publications==
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<biblio>
#Paper1 pmid=20829833
#Paper2 pmid=20577653
#Paper3 Dionisio, JDN and Dahlquist, KD ''Improving the Computer Science in Bioinformatics Through Open Source Pedagogy'' SIGCSE Bulletin 2008 Jun; 40(2) 115-9. doi:10.1145/1383602.1383648 [http://portal.acm.org/citation.cfm?id=1383648&jmp=cit&coll=portal&dl=ACM&CFID=74660743&CFTOKEN=75759974# Abstract]
#Paper4 pmid=17588266
#Paper5 pmid=18428731
#Paper6 pmid=14980020
#Paper7 pmid=12540299
#Paper8 pmid=11984561
#Paper9 pmid=10860719
#Paper10 pmid=9931247
#Paper11 pmid=8893854
#Paper12 pmid=8643361
</biblio>


==Useful links==
Please go to the [http://kdahlquist.github.io/DahlquistLab/publications.htm Dahlquist Lab Publications page] to view a complete list of publications.  Kam Dahlquist's Google Scholar profile is [http://scholar.google.com/citations?user=LYLGfN0AAAAJ&hl=en here].
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[Help|OpenWetWare help pages]]

Latest revision as of 19:56, 4 May 2020

LMU home page

Contact Info

Kam D. Dahlquist, Ph.D.
Professor
Department of Biology
Loyola Marymount University
1 LMU Drive, MS8888
Los Angeles, CA 90045

I am the head of the Dahlquist Lab at Loyola Marymount University. I learned about OpenWetWare through a Google search when I was searching for a protocol online. I've joined because I run a lab with undergraduates at a primarily undergraduate institution and would like to post my protocols and supply lists online for easy access and to share them with the community. I also host some of my courses on this site (see below).

Courses Taught

Education

  • 2000, PhD, University of California, Santa Cruz
  • 1993, BA, Pomona College

Research interests

  1. XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the GenMAPP Classic software
  2. The Global Transcriptional Response of Saccharomyces cerevisiae to Cold Shock and Recovery
  3. Mathematical Modeling of the Transcriptional Network Controlling the Environmental Stress Response in Saccharomyces cerevisiae using the GRNmap software
  4. GRNsight: A Web Application for Visualizing Models of Gene Regulatory Networks

Publications

Please go to the Dahlquist Lab Publications page to view a complete list of publications. Kam Dahlquist's Google Scholar profile is here.

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