User:Kam D. Dahlquist
From OpenWetWare
Contact Info
Kam D. Dahlquist, Ph.D. Associate Professor Department of Biology Loyola Marymount University 1 LMU Drive, MS8220 Los Angeles, CA 90045
I am the head of the Dahlquist Lab at Loyola Marymount University. I learned about OpenWetWare through a Google search when I was searching for a protocol online. I've joined because I run a lab with undergraduates at a primarily undergraduate institution and would like to post my protocols and supply lists online for easy access and to share them with the community.
Education
- 2000, PhD, University of California, Santa Cruz
- 1993, BA, Pomona College
Research interests
- XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the GenMAPP software
- The Global Transcriptional Response of Saccharomyces cerevisiae to Cold Shock and Recovery
- Mathematical Modeling of the Transcriptional Network Controlling the Environmental Stress Response in Saccharomyces cerevisiae
- Identifying Soil Bacteria and Biochemical Pathways in the Ballona Wetlands for the Bioremediation of Organic Pollutants
Publications
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Dionisio, JDN and Dahlquist, KD Improving the Computer Science in Bioinformatics Through Open Source Pedagogy SIGCSE Bulletin 2008 Jun; 40(2) 115-9. doi:10.1145/1383602.1383648 Abstract
- Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, and Pico AR. GenMAPP 2: new features and resources for pathway analysis. BMC Bioinformatics. 2007 Jun 24;8:217. DOI:10.1186/1471-2105-8-217 |
- Dahlquist KD. Using GenMAPP and MAPPFinder to view microarray data on biological pathways and identify global trends in the data. Curr Protoc Bioinformatics. 2004 May;Chapter 7:Unit 7.5. DOI:10.1002/0471250953.bi0705s05 |
- Segal MR, Dahlquist KD, and Conklin BR. Regression approaches for microarray data analysis. J Comput Biol. 2003;10(6):961-80. DOI:10.1089/106652703322756177 |
- Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, and Conklin BR. MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol. 2003;4(1):R7. DOI:10.1186/gb-2003-4-1-r7 |
- Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, and Conklin BR. GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet. 2002 May;31(1):19-20. DOI:10.1038/ng0502-19 |
- Dahlquist KD and Puglisi JD. Interaction of translation initiation factor IF1 with the E. coli ribosomal A site. J Mol Biol. 2000 May 26;299(1):1-15. DOI:10.1006/jmbi.2000.3672 |
- Recht MI, Douthwaite S, Dahlquist KD, and Puglisi JD. Effect of mutations in the A site of 16 S rRNA on aminoglycoside antibiotic-ribosome interaction. J Mol Biol. 1999 Feb 12;286(1):33-43. DOI:10.1006/jmbi.1998.2446 |
- Recht MI, Fourmy D, Blanchard SC, Dahlquist KD, and Puglisi JD. RNA sequence determinants for aminoglycoside binding to an A-site rRNA model oligonucleotide. J Mol Biol. 1996 Oct 4;262(4):421-36. DOI:10.1006/jmbi.1996.0526 |
- Dahlquist K and Puglisi JD. Investigating the structure and function of translation initiation factor 1 in Escherichia coli. Nucleic Acids Symp Ser. 1995(33):170-1.
