User:Kam D. Dahlquist

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Contact Info

Kam D. Dahlquist, Ph.D.
Associate Professor
Department of Biology
Loyola Marymount University
1 LMU Drive, MS8220
Los Angeles, CA 90045 

• Email me through OpenWetWare
• Dahlquist Lab OpenWetware site

I am the head of the Dahlquist Lab at Loyola Marymount University. I learned about OpenWetWare through a Google search when I was searching for a protocol online. I've joined because I run a lab with undergraduates at a primarily undergraduate institution and would like to post my protocols and supply lists online for easy access and to share them with the community.

Courses Taught

• See complete list on this page.
• Links to OpenWetWare sites:
  • BIOL 368 Bioinformatics Laboratory OpenWetWare site
  • BIOL 398-01 Biomathematical Modeling OpenWetWare site
  • BIOL 367 Biological Databases OpenWetWare site
  • BIOL 398-01 Bioinformatics Laboratory OpenWetWare site

Office Hours Fall 2011

TBA

Office: Seaver 218

Education

• 2000, PhD, University of California, Santa Cruz
• 1993, BA, Pomona College

Research interests

1. XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the GenMAPP software
2. The Global Transcriptional Response of Saccharomyces cerevisiae to Cold Shock and Recovery
3. Mathematical Modeling of the Transcriptional Network Controlling the Environmental Stress Response in Saccharomyces cerevisiae
4. Identifying Soil Bacteria and Biochemical Pathways in the Ballona Wetlands for the Bioremediation of Organic Pollutants

Publications

1. Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, Kandasamy K, Lopez-Fuentes AC, Mi H, Pichler E, Rodchenkov I, Splendiani A, Tkachev S, Zucker J, Gopinath G, Rajasimha H, Ramakrishnan R, Shah I, Syed M, Anwar N, Babur O, Blinov M, Brauner E, Corwin D, Donaldson S, Gibbons F, Goldberg R, Hornbeck P, Luna A, Murray-Rust P, Neumann E, Ruebenacker O, Samwald M, van Iersel M, Wimalaratne S, Allen K, Braun B, Whirl-Carrillo M, Cheung KH, Dahlquist K, Finney A, Gillespie M, Glass E, Gong L, Haw R, Honig M, Hubaut O, Kane D, Krupa S, Kutmon M, Leonard J, Marks D, Merberg D, Petri V, Pico A, Ravenscroft D, Ren L, Shah N, Sunshine M, Tang R, Whaley R, Letovksy S, Buetow KH, Rzhetsky A, Schachter V, Sobral BS, Dogrusoz U, McWeeney S, Aladjem M, Birney E, Collado-Vides J, Goto S, Hucka M, Le Novère N, Maltsev N, Pandey A, Thomas P, Wingender E, Karp PD, Sander C, and Bader GD. . pmid:20829833. PubMed HubMed [Paper1]
2. Ogando DG, Dahlquist KD, Alizadeh M, Kunchithapautham K, Li J, Yu N, LaVail MM, Rohrer B, Vollrath D, and Danciger M. . pmid:20577653. PubMed HubMed [Paper2]
3. Dionisio, JDN and Dahlquist, KD Improving the Computer Science in Bioinformatics Through Open Source Pedagogy SIGCSE Bulletin 2008 Jun; 40(2) 115-9. doi:10.1145/1383602.1383648 Abstract

   [Paper3]

4. Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, and Pico AR. . pmid:17588266. PubMed HubMed [Paper4]
5. Dahlquist KD. . pmid:18428731. PubMed HubMed [Paper5]
6. Segal MR, Dahlquist KD, and Conklin BR. . pmid:14980020. PubMed HubMed [Paper6]
7. Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, and Conklin BR. . pmid:12540299. PubMed HubMed [Paper7]
8. Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, and Conklin BR. . pmid:11984561. PubMed HubMed [Paper8]
9. Dahlquist KD and Puglisi JD. . pmid:10860719. PubMed HubMed [Paper9]
10. Recht MI, Douthwaite S, Dahlquist KD, and Puglisi JD. . pmid:9931247. PubMed HubMed [Paper10]
11. Recht MI, Fourmy D, Blanchard SC, Dahlquist KD, and Puglisi JD. . pmid:8893854. PubMed HubMed [Paper11]
12. Dahlquist K and Puglisi JD. . pmid:8643361. PubMed HubMed [Paper12]

Useful links

• Introductory tutorial
• OpenWetWare help pages