07/12/11
- ✓ Assemblies: KAH213, 214, 215; KAH216, 217, 218; KAH207, 208, 209/V0200 (re-do with d.p. treated V200)
Assemblies
- KAH213: (4) KAH54/(S/P)/430 + (1) KAH210/(X/P)/2398
- KAH214: " + (2) KAH211/(X/P)/1321
- KAH215: " + (3) KAH212/(X/P)/1621
- KAH216: hPCD/(S/P)/186 ✓ + KAH210/(X/P)/2398
- KAH217: " + KAH211/(X/P)/1321
- KAH218: " + KAH212/(X/P)/1621
- KAH207/V0200: KAH207/(N/S)/1836 ✓ + V0200/(N/S dp)/4442
- KAH208/V0200: KAH208/(N/S)/1884 ✓ + "
- KAH209/V0200: KAH209/(N/S)/1932 ✓ + "
> Digests (Fermentas FD)
Reagent |
Volume |
|
30 μL/lane, 1% agarose -->
|
DNA (plasmid) |
up to 25 μL
|
10x buffer |
3.0
|
enzyme 1 |
1.0
|
enzyme 2 |
1.0
|
dH2O |
---
|
|
30 μL --> 37°C/ ~30 min.
|
> Measure conc.'s
Sample |
OD260 |
260/280 |
ng/μL
|
1. KAH210 (X/P) |
0.142 |
1.86 |
7.1
|
2. KAH211 (X/P) |
0.328 |
2.05 |
16.4
|
3. KAH212 (X/P) |
0.323 |
1.78 |
16.1
|
4. KAH54 (s/P) |
0.492 |
2.06 |
24.6
|
> Dephosphorylation (Roche)
--> V0200 (N/S)
Reagent |
Volume
|
DNA (clean digest) |
up to 17 μL (500 ng)
|
10x buffer d.p. |
2.0
|
phosphatase |
1.0
|
dH2O |
---
|
|
20 μL --> 37°C/ 10 min.; 75°C/ 2 min.; [final] = 25 ng/μL
|
> Ligations
Ligation |
Plate results (lig : neg crtl) 07/13/11
|
1. KAH210(X/P)/2398, 33 ng + KAH54(S/P)/~3630, 25 ng |
KAH213 >10:1 (Pick 2)
|
2. KAH211(X/P)/1321, 18 ng + " |
KAH214 >10:1 (Pick 2)
|
3. KAH212(X/P)/1621, 22 ng + " |
KAH215 >10:1 (Pick 2)
|
4. KAH54(S/P)/ 25 ng |
|
5. KAH210(X/P)/2398, 35 ng + * hPCD(S/P)/~3386, 25 ng |
KAH216 #:1 (Pick #)
|
6. KAH211(X/P)/1321, 19 ng + " |
KAH217 >10:1 (Pick 2)
|
7. KAH212(X/P)/1621, 24 ng + " |
KAH218 >10:1 (Pick 2)
|
8. hPCD(S/P)/ 25 ng |
|
9. KAH207(N/S)/1836, 21 ng + V0200(N/S dp)/4442, 25 ng |
KAH207/V0200 >10:1 (Pick 2)
|
10. KAH208(N/S)/1884, 21 ng + " |
KAH208/V0200 >10:1 (Pick 2)
|
11. KAH209(N/S)/1932, 22 ng + " |
KAH209/V0200 >10:1 (Pick 2)
|
12. V0200(N/S dp)/ 25 ng |
|
--> * Dilute hPCD to 25 ng/μL before use
|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
11 |
12 |
|
Insert DNA |
5.0 |
1.5 |
1.5 |
--- |
5.0 |
1.5 |
1.5 |
--- |
1.5 |
1.0 |
1.0 |
--- |
|
Vector DNA |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
|
2x lgn buf (Roche) |
7.0 |
7.0 |
7.0 |
7.0 |
7.0 |
7.0 |
7.0 |
7.0 |
5.0 |
5.0 |
5.0 |
5.0 |
|
T4 ligase (NEB) |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
|
dH2O |
--- |
3.5 |
3.5 |
5.0 |
--- |
3.5 |
3.5 |
5.0 |
1.5 |
2.0 |
2.0 |
3.0
|
|
14 μL |
14 μL |
14 μL |
14 μL |
14 μL |
14 μL |
14 μL |
14 μL |
10 μL |
10 μL |
10 μL |
10 μL |
|
--> Add to 30 μL DH5α Turbo; plate on 100μg/mL amp
|