User:Karmella Haynes/Notebook/BioBrick cloning/2013/01/05

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(→01/05/13)
(→01/05/13)
Line 21: Line 21:
# V0120, Gib_BBS F / Gib_BBP R
# V0120, Gib_BBS F / Gib_BBP R
# pSB1A3, Gib_BBS F / Gib_BBP R
# pSB1A3, Gib_BBS F / Gib_BBP R
-
# hPCD, ## / ##
+
# hPCD, BBP-hPCD fwd / hPCD-BL01 rev
-
# BL01, ## / ##
+
# BL01, hPCD-BL01 fwd / BL01-BBS rev
{| {{table}} border="1" cellspacing="3" <!-- Digest check rxn. table -->
{| {{table}} border="1" cellspacing="3" <!-- Digest check rxn. table -->
Line 28: Line 28:
| bgcolor=#cfcfcf | Reagent
| bgcolor=#cfcfcf | Reagent
| bgcolor=#cfcfcf | Volume  
| bgcolor=#cfcfcf | Volume  
-
| rowspan="7" | <u>Expected:</u><br>1. V0120 = size<br>2. pSB1A3 = size<br>3. hPCD = size<br>4. BL01 = size
+
| rowspan="7" | <u>Expected:</u><br>1. V0120 = 3200<br>2. pSB1A3 = 2000<br>3. hPCD = 186<br>4. BL01 = 2520
| rowspan="7" | <!-- [[Image:GelImage.jpg|400px|Hover name]]<br>15 μL/lane; 1% agarose; [http://openwetware.org/wiki/Image:KAH_Fermentas_GeneRuler_1kbplus.jpg Ladder] -->
| rowspan="7" | <!-- [[Image:GelImage.jpg|400px|Hover name]]<br>15 μL/lane; 1% agarose; [http://openwetware.org/wiki/Image:KAH_Fermentas_GeneRuler_1kbplus.jpg Ladder] -->
|-
|-

Revision as of 14:54, 5 January 2013

Karmella's BioBrick Cloning Main project page
Previous entry      Next entry

01/05/13

  • Golden gate: PCR parts, complete protocol for Brady's construct
  • Gibson: PCR parts, complete protocol for Brady's construct


Gibson Assembly

  1. hPCD + BL01 + V0120
  2. hPCD + BL01 + pSB1A3


PCR

  1. V0120, Gib_BBS F / Gib_BBP R
  2. pSB1A3, Gib_BBS F / Gib_BBP R
  3. hPCD, BBP-hPCD fwd / hPCD-BL01 rev
  4. BL01, hPCD-BL01 fwd / BL01-BBS rev
Reagent Volume Expected:
1. V0120 = 3200
2. pSB1A3 = 2000
3. hPCD = 186
4. BL01 = 2520
DNA(plasmid) 0.5 μL
10 μM primer 1 1.0
10 μM primer 2 1.0
2x GoTaq mix 25.0
dH2O ##
  50 μL
  • 95°C, 3 min.
  • [95°C, 30 sec.; 57°C, 30 sec.; 72°C, 2 min.] x 30
  • 72°C, 3 min.
  • 4°C, ∞


Golden Gate Assembly

  • Try new protocol from Dave Savage
  1. hPCD + BL01 + V0120
  2. hPCD + BL01 + pSB1A3
  • Check the sequences for BsmBI sites!

PCR

  1. V0120, gg_BBS F / gg_BBP R
  2. pSB1A3, gg_BBS F / gg_BBP R
  3. hPCD, gg_BBP-hPCD F / gg_hPCD-BL01 R
  4. BL01, gg_BL01 F / gg_BL01-BBS R
Reagent Volume Expected:
1. V0120 = size
2. pSB1A3 = size
3. hPCD = size
4. BL01 = size
DNA(plasmid) 0.5 μL
10 μM primer 1 1.0
10 μM primer 2 1.0
2x GoTaq mix 25.0
dH2O ##
  50 μL
  • 95°C, 3 min.
  • [95°C, 30 sec.; 57°C, 30 sec.; 72°C, 2 min.] x 30
  • 72°C, 3 min.
  • 4°C, ∞




Retrieved from "http://www.openwetware.org/wiki/User:Karmella_Haynes/Notebook/BioBrick_cloning/2013/01/05"
Personal tools