User:Karmella Haynes/Notebook/PcTF Genomics

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(Illumina ChIP-seq)
(Illumina ChIP-seq)
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==Illumina ChIP-seq==
==Illumina ChIP-seq==
* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11],  [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11]
* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11],  [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11]
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* Fasta --> BAM files: Mark Teng
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* Fasta --> BAM files: Mark Teng from the Dinu lab (TGEN)
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* Peak finding DNASTAR Array Star [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/01 21/01/12]
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* Enrichment analysis (DNASTAR software)
* Enrichment analysis (DNASTAR software)
** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]
** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]

Revision as of 13:24, 19 April 2013

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina: 12/13/11, 12/14/11, 12/19/11
  • Fasta --> BAM files: Mark Teng from the Dinu lab (TGEN)
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012
    • BAM --> wig files for UCSC browser workflow 01/07/2013



Cell Type Study

  • Express PcTF (KAH126) in K-562 and SK-N-SH


Recent changes

30 September 2014

+ N    17:50 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/30‎ (3 changes) . . (+1,938) . . (Page history) [Karmella Haynes‎ (3×)]

28 September 2014

+      10:16 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/24‎ (4 changes) . . (+955) . . (Page history) [Karmella Haynes‎ (4×)]
+ N    10:06 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/25‎ (3 changes) . . (+1,442) . . (Page history) [Karmella Haynes‎ (3×)]


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