User:Karmella Haynes/Notebook/PcTF Genomics/2012/09/21: Difference between revisions
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'''Enrichment Histogram'''<br> | '''Enrichment Histogram'''<br> | ||
* Start the '''Array Star''' software on the Windows platform | * Start the '''Array Star''' software on the Windows platform | ||
* Open project Pc-TF (note: need to write protocol for | * Open project Pc-TF (note: need to write protocol for creating new ChIP-seq project) | ||
* Open the Peak Table | * Open the Peak Table | ||
* Select rows to export | * Select rows to export | ||
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** Reads Files: Browse Documents > DNASTAR > Genome > Downloads > (appropriate gbk file) | ** Reads Files: Browse Documents > DNASTAR > Genome > Downloads > (appropriate gbk file) | ||
** File format: FASTQ (with quality scores) | ** File format: FASTQ (with quality scores) | ||
** ( | ** (✓) Launch NGen afterwards, check box | ||
* ''Error: Find reads mer matches. Finding matches (141 Mbases, 0.00100 k reads processed). Values exceeded storge bit allocation'' (Close) | * ''Error: Find reads mer matches. Finding matches (141 Mbases, 0.00100 k reads processed). Values exceeded storge bit allocation'' (Close) | ||
* | * Find new file name.gbk in '''ChIP seq''' | ||
* Start the '''Seq Man NGen''' software | |||
Revision as of 19:53, 1 December 2012
 Pc-TF Genomics
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<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
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09/21/12
Enrichment Histogram
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