The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
 Pc-TF Genomics
|
<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>
|
|
12/26/12
- ChIP-seq enrichment: PcTF vs. PcTF mock for select genes
ChIP: PcTF vs. PcTF mock
- Completed PcTF (lane 1) and PcTF mock (lane 2) BAM --> assembly workflow
- Open in SeqMan pro to see raw values for four genes from 2011 paper.
Workflow
- Open SeqMan Pro. File > Open > navigate to the desired ###.assmebly file in the SeqMan NGen Projects folder. Processing takes 5 -10 minutes.
- In an internet browser, go to the UCSC genome browser. Select Feb. 2009 GRCh37/hg19.
- Enter a gene name. Click [Submit].
- Take note of the chromosome number and coordinates.
- Find the appropriate assembly template in the SeqMan Pro (e.g., NC_000001 for chromosome 1). Double click it.
1. Name: CDKN2A, Coordinates: chr9: 21,967, 751..21,975,132
- SeqMan Pro template "NC000009(1>141215022) NC_000009"
|
Pc-TF Genomics
