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Pc-TF Genomics
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01/06/13
- ChIP seq: run SeqMan NGen alignment on H3K27me3 mock (lane 7)
- Expand table from 1/05/13 to include PcTF, PcTF mock, H3K27me3, H3K27me3 mock
Gene |
Chromosome |
Expected state |
H3K27me3 max. DOC |
H3K27me3 mock max. DOC |
PcTF max. DOC |
PcTF mock max. DOC
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ALAS1 |
chr 3 |
active |
~160 |
~100 |
~10 |
|
TBP |
chr 6 |
active |
~160 |
~275 |
~16 |
|
ACTB |
chr 7 |
active |
~180 |
~1 |
~22
|
GUSB |
chr 7 |
active |
~160 |
~240 |
~16
|
PPIA |
chr 7 |
active |
~90 |
~480 |
~10
|
GAPDH |
chr 12 |
active |
~90 |
~240 |
|
B2M |
chr 15 |
active |
0 |
~1 |
~15
|
G6PD |
chr X (23) |
active |
~130 |
0 |
~14
|
HPRT1 |
chr X (23) |
active |
~150 |
~320 |
~11
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PGK1 |
chr X (23) |
active |
~240 |
~475 |
~12
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CDKN2A |
chr9 |
silent (H3K27me3+) |
~90 |
~650 |
~17
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MMP12 |
chr11 |
silent (H3K27me3+) |
~18 |
~1 |
~6
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MYT1 |
chr20 |
silent (H3K27me3+) |
~270 |
~525 |
~32
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OLIG1 |
chr21 |
silent (H3K27me3+) |
0 |
0 |
|
OLIG2 |
chr21 |
silent (H3K27me3+) |
~130 |
0
|
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